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Bioconductor<p>🚀 Just a reminder that the Bioconductor Developer Forum is on this Monday!</p><p>Join us for a session on Exploring R and Rust in Bioinformatics with great speakers and community discussion.</p><p>🗓️ Date: Monday, July 28<br>🕔 Time: 11:00 AM EDT / 17:00 CEST<br>📢 Full details + Zoom link: <a href="https://blog.bioconductor.org/posts/2025-07-09-developers-forum-july28/" rel="nofollow noopener" translate="no" target="_blank"><span class="invisible">https://</span><span class="ellipsis">blog.bioconductor.org/posts/20</span><span class="invisible">25-07-09-developers-forum-july28/</span></a> </p><p><a href="https://genomic.social/tags/Bioconductor" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Bioconductor</span></a> <a href="https://genomic.social/tags/RStats" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>RStats</span></a> <a href="https://genomic.social/tags/RustLang" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>RustLang</span></a> <a href="https://genomic.social/tags/OpenSource" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>OpenSource</span></a></p>
Bioconductor<p>📝 New blog post: Tagging Bioconductor packages with EDAM </p><p><a href="https://blog.bioconductor.org/posts/2025-07-18-edam/" rel="nofollow noopener" translate="no" target="_blank"><span class="invisible">https://</span><span class="ellipsis">blog.bioconductor.org/posts/20</span><span class="invisible">25-07-18-edam/</span></a> </p><p><a href="https://genomic.social/tags/Bioconductor" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Bioconductor</span></a> <a href="https://genomic.social/tags/RStats" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>RStats</span></a> <a href="https://genomic.social/tags/EDAM" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>EDAM</span></a> <a href="https://genomic.social/tags/Ontology" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Ontology</span></a></p>
Bioconductor<p>🌟 Annual Nominations Open for CAB &amp; TAB! 🌟</p><p>Want to contribute to Bioconductor, or know someone who should? Join our advisory boards!</p><p>🌐 Community Advisory Board (CAB):<br>- Enable productive and respectful participation<br>- Empower user and developer communities</p><p>🔧 Technical Advisory Board (TAB):<br>- Ensure long-term technical suitability<br>- Develop funding strategies for project viability</p><p>📅 Apply by Aug 31:<br>CAB: <a href="https://forms.gle/8NYxRGhprfuNBoRK7" rel="nofollow noopener" translate="no" target="_blank"><span class="invisible">https://</span><span class="">forms.gle/8NYxRGhprfuNBoRK7</span><span class="invisible"></span></a> <br>TAB: <a href="https://forms.gle/eqef9ThpUypcJ5936" rel="nofollow noopener" translate="no" target="_blank"><span class="invisible">https://</span><span class="">forms.gle/eqef9ThpUypcJ5936</span><span class="invisible"></span></a> </p><p><a href="https://genomic.social/tags/Bioconductor" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Bioconductor</span></a> <a href="https://genomic.social/tags/RStats" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>RStats</span></a></p>
Bioconductor<p>📄 New opinion piece by Vince Carey: Bioconductor: Planning a third decade of comprehensive support for genomic data science</p><p><a href="https://doi.org/10.1016/j.patter.2025.101319" rel="nofollow noopener" translate="no" target="_blank"><span class="invisible">https://</span><span class="ellipsis">doi.org/10.1016/j.patter.2025.</span><span class="invisible">101319</span></a> </p><p><a href="https://genomic.social/tags/Bioconductor" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Bioconductor</span></a> <a href="https://genomic.social/tags/RStats" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>RStats</span></a> <a href="https://genomic.social/tags/OpenScience" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>OpenScience</span></a></p>
Bioconductor<p>🎨 Calling all Bioconductor package developers!</p><p>We’re building a Sticker Hexwall for <a href="https://genomic.social/tags/EuroBioC2025" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>EuroBioC2025</span></a> </p><p>Submit your package sticker by July 22 to be featured:<br>🔗 <a href="https://eurobioc2025.bioconductor.org/pages/hexwall.html" rel="nofollow noopener" translate="no" target="_blank"><span class="invisible">https://</span><span class="ellipsis">eurobioc2025.bioconductor.org/</span><span class="invisible">pages/hexwall.html</span></a></p><p>Know a package that’s missing a sticker? Encourage them to join in!</p><p><a href="https://genomic.social/tags/Bioconductor" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Bioconductor</span></a> <a href="https://genomic.social/tags/RStats" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>RStats</span></a></p>
Bioconductor<p>💻🧬 Join the Bioconductor project at BioHackathon Europe 2025!</p><p>We're excited to be part of BioHackathon Europe 2025 (Berlin, Nov 3–7) with a project focused on improving metadata and interoperability in bioinformatics.</p><p>In-person registration closes Tuesday, July 15 - virtual participation stays open!</p><p>🔗 Project details: <a href="https://github.com/elixir-europe/biohackathon-projects-2025/blob/main/13.md" rel="nofollow noopener" translate="no" target="_blank"><span class="invisible">https://</span><span class="ellipsis">github.com/elixir-europe/bioha</span><span class="invisible">ckathon-projects-2025/blob/main/13.md</span></a><br>🔗 All projects: <a href="https://biohackathon-europe.org/projects/" rel="nofollow noopener" translate="no" target="_blank"><span class="invisible">https://</span><span class="ellipsis">biohackathon-europe.org/projec</span><span class="invisible">ts/</span></a></p><p>Join the discussion in the <a href="https://genomic.social/tags/edam" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>edam</span></a>-collaboration channel on Bioconductor Zulip.</p><p><a href="https://genomic.social/tags/Bioconductor" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Bioconductor</span></a> <a href="https://genomic.social/tags/Bioinformatics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Bioinformatics</span></a></p>
Bioconductor<p>Join the Bioconductor Developer Forum - R &amp; Rust in Bioinformatics</p><p>Curious about combining R and Rust in your bioinformatics workflows?</p><p>On 28 July, join us for an online session featuring talks on extendr, Rust-based package development, and real-world use cases in Bioconductor and CRAN.</p><p>🗓️ Date: Monday, 28 July 2025<br>🕔 Time: 17:00–18:00 CEST<br>📍 Location: Online<br>🔗 Read the blog post <a href="https://blog.bioconductor.org/posts/2025-07-09-developers-forum-july28/" rel="nofollow noopener" translate="no" target="_blank"><span class="invisible">https://</span><span class="ellipsis">blog.bioconductor.org/posts/20</span><span class="invisible">25-07-09-developers-forum-july28/</span></a> </p><p><a href="https://genomic.social/tags/Bioconductor" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Bioconductor</span></a> <a href="https://genomic.social/tags/RStats" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>RStats</span></a> <a href="https://genomic.social/tags/RustLang" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>RustLang</span></a> <a href="https://genomic.social/tags/Bioinformatics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Bioinformatics</span></a> <a href="https://genomic.social/tags/OpenSource" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>OpenSource</span></a></p>
Bioconductor<p>📣 BioCAsia 2025: Call for Workshops</p><p>Join the Bioconductor stream at ABACBS 2025 in Adelaide!</p><p>Submit your hands-on workshop EOI by August 1.</p><p>Flexible 90-min blocks.</p><p>➡️ <a href="https://www.abacbs.org/abacbs-2025-workshops" rel="nofollow noopener" translate="no" target="_blank"><span class="invisible">https://www.</span><span class="ellipsis">abacbs.org/abacbs-2025-worksho</span><span class="invisible">ps</span></a> </p><p><a href="https://genomic.social/tags/Bioconductor" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Bioconductor</span></a> <a href="https://genomic.social/tags/BioCAsia2025" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>BioCAsia2025</span></a> <a href="https://genomic.social/tags/RStats" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>RStats</span></a></p>
Bioconductor<p>📝 New blog post: Bioconductor in Brazil (Microbiome workshop recap) 🇧🇷</p><p>Bioconductor’s first microbiome course in Brazil took place at UFMG in Belo Horizonte, led by Leo Lahti and Izabela Mamede.<br>The workshop brought together students, researchers, and instructors to explore microbiome data analysis using Bioconductor tools and the OMA book.</p><p>🔗 <a href="https://blog.bioconductor.org/posts/2025-07-10-microbiome-course-brazil/" rel="nofollow noopener" translate="no" target="_blank"><span class="invisible">https://</span><span class="ellipsis">blog.bioconductor.org/posts/20</span><span class="invisible">25-07-10-microbiome-course-brazil/</span></a></p><p>💬 Join the conversation in Bioconductor Zulip: <a href="https://genomic.social/tags/miaverse" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>miaverse</span></a> and <a href="https://genomic.social/tags/microbiome_metagenome" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>microbiome_metagenome</span></a></p><p><a href="https://genomic.social/tags/Bioconductor" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Bioconductor</span></a> <a href="https://genomic.social/tags/RStats" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>RStats</span></a> <a href="https://genomic.social/tags/OpenScience" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>OpenScience</span></a></p>
Bioconductor<p>⏰ Reminder: EuroBioC2025 late-breaking poster submissions close this Friday, July 11!</p><p>Submit your abstract to present your work in Barcelona, Sept 17–19:<br>🔗 forms.gle/ewTGdKzB2xyEg58f8 </p><p>Don’t miss your chance to be part of <a href="https://genomic.social/tags/EuroBioC2025" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>EuroBioC2025</span></a>!</p><p><a href="https://genomic.social/tags/Bioinformatics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Bioinformatics</span></a> <a href="https://genomic.social/tags/RStats" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>RStats</span></a> <a href="https://genomic.social/tags/Bioconductor" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Bioconductor</span></a></p>
Lluís Revilla<p>It is still 3 weeks away but there will be a developer session about <a href="https://fosstodon.org/tags/Rust" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Rust</span></a> and <a href="https://fosstodon.org/tags/rStats" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>rStats</span></a> for <span class="h-card" translate="no"><a href="https://genomic.social/@bioconductor" class="u-url mention" rel="nofollow noopener" target="_blank">@<span>bioconductor</span></a></span> (and other interested developer) lead by Sun Wenji, and <span class="h-card" translate="no"><a href="https://fosstodon.org/@josi" class="u-url mention" rel="nofollow noopener" target="_blank">@<span>josi</span></a></span> among other :rust:-:rstats: developers 🚀 . </p><p>I still don't know the link to the event but we know the date and hour, so mark your calendar 📆 <br>July 28th at 17:00 to 18:00 CEST</p><p>I'll share more details as soon as I know them</p><p><a href="https://fosstodon.org/tags/Bioconductor" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Bioconductor</span></a></p>
Bioconductor<p>📝 New blog post: Bioconductor and ggplot2 4.0.0 – What’s Changing and How to Prepare</p><p>A major ggplot2 update (v4.0.0) is coming and may affect many Bioconductor packages. This post explains what’s changing, how to test your packages, and where to get help.</p><p>📖 Read more: <a href="https://blog.bioconductor.org/posts/2025-07-07-ggplot2-update/" rel="nofollow noopener" translate="no" target="_blank"><span class="invisible">https://</span><span class="ellipsis">blog.bioconductor.org/posts/20</span><span class="invisible">25-07-07-ggplot2-update/</span></a></p><p><a href="https://genomic.social/tags/Bioconductor" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Bioconductor</span></a> <a href="https://genomic.social/tags/RStats" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>RStats</span></a> <a href="https://genomic.social/tags/ggplot2" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>ggplot2</span></a></p>
Bioconductor<p>📝 New Bioconductor blog post!</p><p>Written during <a href="https://genomic.social/tags/GBCC2025" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>GBCC2025</span></a> CoFest, this post highlights recent work to bring Bioconductor tools into Galaxy, featuring training materials, wrapper examples, and ideas for tool developers. </p><p>Read more 👉 <a href="https://blog.bioconductor.org/posts/2025-07-03-bioc-to-galaxy/" rel="nofollow noopener" translate="no" target="_blank"><span class="invisible">https://</span><span class="ellipsis">blog.bioconductor.org/posts/20</span><span class="invisible">25-07-03-bioc-to-galaxy/</span></a></p><p><a href="https://genomic.social/tags/Bioconductor" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Bioconductor</span></a> <a href="https://genomic.social/tags/Bioinformatics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Bioinformatics</span></a> <a href="https://genomic.social/tags/RStats" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>RStats</span></a> <a href="https://genomic.social/tags/GalaxyProject" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>GalaxyProject</span></a> <a href="https://genomic.social/tags/OpenScience" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>OpenScience</span></a></p>
Bioconductor<p>Thank you to everyone who made <a href="https://genomic.social/tags/GBCC2025" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>GBCC2025</span></a> such a great week!</p><p>From keynotes and technical talks to CoFest projects, it was a brilliant example of cross-community collaboration between Bioconductor and Galaxy 💻🧬</p><p><a href="https://genomic.social/tags/Bioconductor" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Bioconductor</span></a> <a href="https://genomic.social/tags/GalaxyProject" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>GalaxyProject</span></a> <a href="https://genomic.social/tags/OpenScience" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>OpenScience</span></a> <a href="https://genomic.social/tags/Bioinformatics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Bioinformatics</span></a></p>
Physalia-courses<p>Registrations are now open for the next edition of the <a href="https://ecoevo.social/tags/Metabolomics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Metabolomics</span></a> with R and <a href="https://ecoevo.social/tags/Bioconductor" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Bioconductor</span></a> course.</p><p><a href="https://www.physalia-courses.org/courses-workshops/course55/" rel="nofollow noopener" translate="no" target="_blank"><span class="invisible">https://www.</span><span class="ellipsis">physalia-courses.org/courses-w</span><span class="invisible">orkshops/course55/</span></a></p>
Bioconductor<p>📣 Late-breaking poster call for <a href="https://genomic.social/tags/EuroBioC2025" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>EuroBioC2025</span></a> is now open! </p><p>Submit by July 11 to present your work in Barcelona this September.<br>🔗 <a href="https://forms.gle/ewTGdKzB2xyEg58f8" rel="nofollow noopener" translate="no" target="_blank"><span class="invisible">https://</span><span class="">forms.gle/ewTGdKzB2xyEg58f8</span><span class="invisible"></span></a><br>📅 Notifications by July 15</p><p><a href="https://genomic.social/tags/Bioconductor" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Bioconductor</span></a> <a href="https://genomic.social/tags/Bioinformatics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Bioinformatics</span></a></p>
Bioconductor<p>📝 New blog post from the Bioconductor Training Committee!</p><p>We’re collaborating with <span class="h-card" translate="no"><a href="https://ecoevo.social/@physaliacourses2" class="u-url mention" rel="nofollow noopener" target="_blank">@<span>physaliacourses2</span></a></span> to offer co-branded training in bioinformatics and computational biology.</p><p>Read more 👉 <a href="https://blog.bioconductor.org/posts/2025-06-20-physalia-collaboration/" rel="nofollow noopener" translate="no" target="_blank"><span class="invisible">https://</span><span class="ellipsis">blog.bioconductor.org/posts/20</span><span class="invisible">25-06-20-physalia-collaboration/</span></a></p><p><a href="https://genomic.social/tags/Bioinformatics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Bioinformatics</span></a> <a href="https://genomic.social/tags/Bioconductor" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Bioconductor</span></a> <a href="https://genomic.social/tags/OpenScience" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>OpenScience</span></a></p>
Bioconductor<p>🎉 Two weeks in, and our move from Slack to Zulip is going great.<br>Thanks to everyone in the Bioconductor community for helping make the switch smooth and getting involved in the new space.</p><p>If you haven’t joined yet, come take a look:<br>➡️ <a href="https://chat.bioconductor.org" rel="nofollow noopener" translate="no" target="_blank"><span class="invisible">https://</span><span class="">chat.bioconductor.org</span><span class="invisible"></span></a><br>📖 <a href="https://blog.bioconductor.org/posts/2025-05-29-slack-to-zulip/" rel="nofollow noopener" translate="no" target="_blank"><span class="invisible">https://</span><span class="ellipsis">blog.bioconductor.org/posts/20</span><span class="invisible">25-05-29-slack-to-zulip/</span></a></p><p>Big thanks to the <a href="https://fosstodon.org/@zulip" rel="nofollow noopener" translate="no" target="_blank"><span class="invisible">https://</span><span class="">fosstodon.org/@zulip</span><span class="invisible"></span></a> team for supporting open-source communities. </p><p><a href="https://genomic.social/tags/Bioconductor" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Bioconductor</span></a> <a href="https://genomic.social/tags/RStats" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>RStats</span></a> <a href="https://genomic.social/tags/OpenSource" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>OpenSource</span></a></p>
Bioconductor<p>⏰ Today’s the day! ⏳</p><p>It’s your last chance to register for GBCC2025 with on-site housing included at Cold Spring Harbor. Join us for a week of cutting-edge science, hands-on workshops, and community connections. </p><p>Learn more and register now: <a href="https://gbcc2025.bioconductor.org/" rel="nofollow noopener" translate="no" target="_blank"><span class="invisible">https://</span><span class="">gbcc2025.bioconductor.org/</span><span class="invisible"></span></a> </p><p><a href="https://genomic.social/tags/GBCC2025" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>GBCC2025</span></a> <a href="https://genomic.social/tags/Bioconductor" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Bioconductor</span></a> <a href="https://genomic.social/tags/UseGalaxy" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>UseGalaxy</span></a> <a href="https://genomic.social/tags/DataScience" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>DataScience</span></a></p>
Bioconductor<p>⏰ Reminder: The GBCC2025 scholarship deadline is this Monday, 2 June!<br>Don’t miss your chance to apply: <a href="https://forms.gle/WKoLb5NUR6FVmeRM9" rel="nofollow noopener" translate="no" target="_blank"><span class="invisible">https://</span><span class="">forms.gle/WKoLb5NUR6FVmeRM9</span><span class="invisible"></span></a><br>Feel free to share with others who might be interested. </p><p><a href="https://genomic.social/tags/GBCC2025" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>GBCC2025</span></a> <a href="https://genomic.social/tags/Bioconductor" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Bioconductor</span></a> <a href="https://genomic.social/tags/UseGalaxy" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>UseGalaxy</span></a> <a href="https://genomic.social/tags/DataScience" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>DataScience</span></a></p>