TechHub

0 posts0 participants0 posts today

Stephen RoyleI promised myself a while back that I wouldn't write any more <a href="https://biologists.social/tags/ImageJ" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#ImageJ</a> Macro code. When I made this promise I forgot about all the scripts that we have in use. “Oh, this one just needs a few tweaks and then it can be used in another project." And here I am again in ijm hell!<a href="https://biologists.social/tags/AdventuresInCode" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#AdventuresInCode</a> <a href="https://biologists.social/tags/LifeOfPI" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#LifeOfPI</a>

quantixedTips from the Blog XVII: better Process Folder template in Fiji<a href="https://quantixed.org/2025/02/16/tips-from-the-blog-xvii-better-process-folder-template-in-fiji/" rel="nofollow noopener noreferrer" translate="no" target="_blank">https://quantixed.org/2025/02/16/tips-from-the-blog-xvii-better-process-folder-template-in-fiji/</a><a href="https://fosstodon.org/tags/AdventuresInCode" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#AdventuresInCode</a> <a href="https://fosstodon.org/tags/computing" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#computing</a> <a href="https://fosstodon.org/tags/FIJI" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#FIJI</a> <a href="https://fosstodon.org/tags/ImageJ" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#ImageJ</a> <a href="https://fosstodon.org/tags/tftb" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#tftb</a>

Estrellas Compartidas ☮️🌟 🌈 🔭 Aprovechando un poco el buen tiempo por acá. 🌌 🥰 Sacando espectros de estrellas, teniendo como plato fuerte estrellas en Orión. En este caso, el tercer espectro extraído: Betelgeuse.🐧 Usando <a href="https://mastodon.social/tags/Kstars" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#Kstars</a> en la captura, @siril.org para el apilado <a href="https://mastodon.social/tags/ImageJ" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#ImageJ</a> para graficar.<a href="https://mastodon.social/tags/SoftwareLibre" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#SoftwareLibre</a>

David HaberthürAm Zukunftstag hatte ich eine interessierte Besucherin hier im Labor.Sie hat eine munzig kleine Spinne aus dem Feuerholzstapel zuhause mitgenommen (der Hinterkörper der Spinne ist 1.7 mm dick).Diese haben wir in etwas Schaumstoff eingebettet und dann auf unserem <a href="https://mastodon.social/tags/Bruker" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#Bruker</a> <a href="https://mastodon.social/tags/SkyScan" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#SkyScan</a> 2214 aufgenommen (mit 3 um Pixelgrösse). Dann haben wir die Tomographiedaten angeschaut und in <a href="https://mastodon.social/tags/ImageJ" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#ImageJ</a> an den Schnittbildern ein paar Dinge daran gemessen (deshalb wissen wir, das der Hinterkörper 1.7 mm dick ist).

nKiaruHere's a small recursive image of the Fiji logo made in <a href="https://mastodon.social/tags/ImageJ" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#ImageJ</a> and <a href="https://mastodon.social/tags/Fiji" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#Fiji</a>

nKiaruSome people are just nuts. I love it.See what this guy did with the <a href="https://mastodon.social/tags/ImageJ" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#ImageJ</a> macro language.<a href="https://www.reddit.com/r/ImageJ/comments/1gfbnkq/strange_fiji_macro_shows_weird_video_feed/" rel="nofollow noopener noreferrer" translate="no" target="_blank">https://www.reddit.com/r/ImageJ/comments/1gfbnkq/strange_fiji_macro_shows_weird_video_feed/</a>

Bose-Einstein-Kondensat<a href="https://mstdn.social/tags/%C2%B5Manager" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#µManager</a>: <a href="https://mstdn.social/tags/OpenSource" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#OpenSource</a> software for control & <a href="https://mstdn.social/tags/automation" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#automation</a> of <a href="https://mstdn.social/tags/microscope" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#microscope</a> <a href="https://mstdn.social/tags/hardware" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#hardware</a>:-integrated with <a href="https://mstdn.social/tags/ImageJ" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#ImageJ</a> -works with <a href="https://mstdn.social/tags/Leica" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#Leica</a>, <a href="https://mstdn.social/tags/Nikon" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#Nikon</a>, <a href="https://mstdn.social/tags/Olympus" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#Olympus</a> & <a href="https://mstdn.social/tags/Zeiss" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#Zeiss</a>Web: <a href="https://micro-manager.org/" rel="nofollow noopener noreferrer" translate="no" target="_blank">https://micro-manager.org/</a> Github: <a href="https://github.com/micro-manager" rel="nofollow noopener noreferrer" translate="no" target="_blank">https://github.com/micro-manager</a><a href="https://mstdn.social/tags/DIYbio" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#DIYbio</a> <a href="https://mstdn.social/tags/lab" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#lab</a> <a href="https://mstdn.social/tags/instruments" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#instruments</a> <a href="https://mstdn.social/tags/MicroManager" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#MicroManager</a> <a href="https://mstdn.social/tags/microscopy" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#microscopy</a> <a href="https://mstdn.social/tags/imaging" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#imaging</a>

Jocelyn<a href="https://social.sciences.re/@jaztrophysicist" class="u-url mention" rel="nofollow noopener noreferrer" target="_blank">@jaztrophysicist</a> Confirmed. But if I have <a href="https://mastodon.gougere.fr/tags/ImageJ" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#ImageJ</a> with me, I can find prey and gobbl... 🤢 -burp-<a href="https://mastodon.gougere.fr/tags/colorblind" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#colorblind</a>

Stephen RoyleIf I do a PR to fix this one-letter typo in <a href="https://biologists.social/tags/ImageJ" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#ImageJ</a> is everybody going to think I have lost the plot.<a href="https://biologists.social/tags/GitHub" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#GitHub</a>

Mike TorrWhen I search for documentation on ImageJ (the image processing library for Java) I get LOADS of hits about science image-processing software with the same name. I'm starting to think they might be the same thing. ARE they? Or am I confused? Are there two things called ImageJ?<a href="https://mastodon.scot/tags/Software" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#Software</a> <a href="https://mastodon.scot/tags/Coding" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#Coding</a> <a href="https://mastodon.scot/tags/ImageJ" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#ImageJ</a>

David MasonI am honestly floored at the <a href="https://mas.to/tags/SegmentAnything" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#SegmentAnything</a> implementation for <a href="https://mas.to/tags/ImageJ" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#ImageJ</a> / <a href="https://mas.to/tags/Fiji" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#Fiji</a> Even running on a laptop, once loaded, it's incredibly quick.Moreover, it's a super-simple install which is a major barrier to many <a href="https://mas.to/tags/AI" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#AI</a> <a href="https://mas.to/tags/DeepLearning" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#DeepLearning</a> implementations.Time to play around with some <a href="https://mas.to/tags/Microscopy" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#Microscopy</a> and <a href="https://mas.to/tags/DigitalPathology" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#DigitalPathology</a> data!Details here: <a href="https://github.com/segment-anything-models-java/SAMJ-IJ" rel="nofollow noopener noreferrer" translate="no" target="_blank">https://github.com/segment-anything-models-java/SAMJ-IJ</a> Photo source: <a href="https://www.pexels.com/photo/photo-of-railway-on-mountain-near-houses-1658967/" rel="nofollow noopener noreferrer" translate="no" target="_blank">https://www.pexels.com/photo/photo-of-railway-on-mountain-near-houses-1658967/</a>

quantixedMonster Movie: making movie files from microscopy data<a href="https://quantixed.org/2024/03/19/monster-movie-making-movie-files-from-microscopy-data/" rel="nofollow noopener noreferrer" translate="no" target="_blank">https://quantixed.org/2024/03/19/monster-movie-making-movie-files-from-microscopy-data/</a><a href="https://fosstodon.org/tags/computing" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#computing</a> <a href="https://fosstodon.org/tags/science" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#science</a> <a href="https://fosstodon.org/tags/ffmpeg" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#ffmpeg</a> <a href="https://fosstodon.org/tags/FIJI" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#FIJI</a> <a href="https://fosstodon.org/tags/ImageJ" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#ImageJ</a> <a href="https://fosstodon.org/tags/microscopy" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#microscopy</a>

Bose-Einstein-Kondensat<a href="https://mstdn.social/tags/PatternJ" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#PatternJ</a>: An <a href="https://mstdn.social/tags/ImageJ" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#ImageJ</a> <a href="https://mstdn.social/tags/OpenSource" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#OpenSource</a> toolset for the <a href="https://mstdn.social/tags/automated" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#automated</a> & quantitative <a href="https://mstdn.social/tags/analysis" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#analysis</a> of regular spatial <a href="https://mstdn.social/tags/patterns" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#patterns</a> found in <a href="https://mstdn.social/tags/cells" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#cells</a> & <a href="https://mstdn.social/tags/tissue" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#tissue</a>:-video <a href="https://mstdn.social/tags/tutorial" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#tutorial</a> available<a href="https://doi.org/10.1101/2024.01.17.576053" rel="nofollow noopener noreferrer" translate="no" target="_blank">https://doi.org/10.1101/2024.01.17.576053</a> <a href="https://mstdn.social/tags/DIYbio" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#DIYbio</a> <a href="https://mstdn.social/tags/lab" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#lab</a> <a href="https://mstdn.social/tags/instruments" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#instruments</a> <a href="https://mstdn.social/tags/imaging" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#imaging</a> <a href="https://mstdn.social/tags/Fiji" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#Fiji</a> <a href="https://mstdn.social/tags/biology" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#biology</a> <a href="https://mstdn.social/tags/microscopy" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#microscopy</a> <a href="https://mstdn.social/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#bioinformatics</a>

dorotaCLearning about my <a href="https://fosstodon.org/tags/robot" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#robot</a> <a href="https://fosstodon.org/tags/vacuum" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#vacuum</a> with <a href="https://fosstodon.org/tags/GIMP" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#GIMP</a> .A hint that will save hours of your time: use the correct image -_-.Points matched with <a href="https://fosstodon.org/tags/hugin" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#hugin</a> , aligned with <a href="https://fosstodon.org/tags/imagemagick" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#imagemagick</a> (deform) then <a href="https://fosstodon.org/tags/scikitimage" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#scikitimage</a> (PiecewiseAffine) then with <a href="https://fosstodon.org/tags/imagej" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#imagej</a> <a href="https://fosstodon.org/tags/bigwarp" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#bigwarp</a> .<a href="https://fosstodon.org/tags/ReverseEngineering" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#ReverseEngineering</a> <a href="https://fosstodon.org/tags/graphics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#graphics</a> <a href="https://fosstodon.org/tags/imageprocessing" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#imageprocessing</a> <a href="https://fosstodon.org/tags/electronics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#electronics</a>

Albert CardonaFrom Oliver Burri via <a href="https://mathstodon.xyz/tags/ImageJ" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#ImageJ</a> mailing list:SwitZerland’s Image and Data Analysis School <a href="https://mathstodon.xyz/tags/ZIDAS2024" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#ZIDAS2024</a>At ETH Zurich from June 23th (Yes, Sunday!) to June 28th 2024.Are you a life scientist working with microscopy images? Do you feel like you could use a nudge in the right direction in order to dive into quantitative image analysis ? Want to learn to program in ImageJ macro language, use novel deep learning tools, discover best practices in image processing all while working on your own data?The program will focus on hands-on work using the best open source tools available to the BioImage Analysis community.Registration is open until 2024-03-16.<a href="https://2024.zidas.org" rel="nofollow noopener noreferrer" translate="no" target="_blank">https://2024.zidas.org</a> <a href="https://mathstodon.xyz/tags/BioimageInformatics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#BioimageInformatics</a> <a href="https://mathstodon.xyz/tags/ImageProcessing" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#ImageProcessing</a>

Dr. Juande Santander-VelaTIL about ImageJ.JS [1], a JS transcompiled version of ImageJ.[1]: <a href="https://ij.imjoy.io" rel="nofollow noopener noreferrer" translate="no" target="_blank">https://ij.imjoy.io</a>I did it because I was looking for a way to illustrate today’s APOD [2] image, and I thought that a profile would illustrate it very clearly. [2]: <a href="https://apod.nasa.gov/apod/ap231218.html" rel="nofollow noopener noreferrer" translate="no" target="_blank">https://apod.nasa.gov/apod/ap231218.html</a>Below you can find some screenshots of ImageJ.JS in action running on iPadOS 17. The Alt-text includes proper descriptions and captions for them.<a href="https://astrodon.social/tags/ImageJ" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#ImageJ</a> <a href="https://astrodon.social/tags/ImageJJS" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#ImageJJS</a> <a href="https://astrodon.social/tags/OpticalIllusions" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#OpticalIllusions</a> <a href="https://astrodon.social/tags/ImageProfile" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#ImageProfile</a>

quantixedI found a lexer for <a href="https://fosstodon.org/tags/ImageJ" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#ImageJ</a> Macros in <a href="https://fosstodon.org/tags/VSCode" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#VSCode</a>. Now I can use co-pilot for coding ijm.

Bruno C. Vellutini<a href="https://brunovellutini.com/@blog" class="u-url mention" rel="nofollow noopener noreferrer" target="_blank">@blog</a> I write about biology, imaging, coding, music, and other things I find interesting to share.Here are some keywords from the latest posts:<a href="https://biologists.social/tags/Science" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#Science</a> <a href="https://biologists.social/tags/Biology" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#Biology</a> <a href="https://biologists.social/tags/Outreach" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#Outreach</a> <a href="https://biologists.social/tags/Cifonauta" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#Cifonauta</a> <a href="https://biologists.social/tags/MarineInvertebrates" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#MarineInvertebrates</a> <a href="https://biologists.social/tags/Flies" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#Flies</a> <a href="https://biologists.social/tags/EvoDevo" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#EvoDevo</a> <a href="https://biologists.social/tags/DevBio" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#DevBio</a> <a href="https://biologists.social/tags/Wnt" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#Wnt</a> <a href="https://biologists.social/tags/Embryo" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#Embryo</a> <a href="https://biologists.social/tags/Larva" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#Larva</a> <a href="https://biologists.social/tags/ImageJ" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#ImageJ</a> <a href="https://biologists.social/tags/ImageProcessing" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#ImageProcessing</a> <a href="https://biologists.social/tags/SciArt" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#SciArt</a>

Andrew KnissOr, alternatively, be willing to process and analyze some images for $$$? <a href="https://scicomm.xyz/tags/imageJ" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#imageJ</a> <a href="https://scicomm.xyz/tags/plantscience" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#plantscience</a>

Andrew KnissAre there any <a href="https://scicomm.xyz/tags/ImageJ" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#ImageJ</a> users out there that might give me some tips on how to process and analyze some images of bean pods? <a href="https://scicomm.xyz/tags/plantscience" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#plantscience</a> <a href="https://scicomm.xyz/tags/plants" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#plants</a> <a href="https://scicomm.xyz/tags/science" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#science</a>

Recent searches

Search options

Administered by:

Server stats:

#imagej