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#bioinformatics

22 posts16 participants3 posts today
WikiPathways<p>our new website has a full overview at <a href="https://www.wikipathways.org/browse/citedin" rel="nofollow noopener" translate="no" target="_blank"><span class="invisible">https://www.</span><span class="">wikipathways.org/browse/citedin</span><span class="invisible"></span></a></p><p>You may note differences in the numbers. One reason is that not all cited pathways are in fact on the new website</p><p><a href="https://fosstodon.org/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>bioinformatics</span></a></p>
US<p><a href="https://www.europesays.com/us/96424/" rel="nofollow noopener" translate="no" target="_blank"><span class="invisible">https://www.</span><span class="">europesays.com/us/96424/</span><span class="invisible"></span></a> Empowering our communities and region with Genomics | Featured Columnists <a href="https://pubeurope.com/tags/AnimalHusbandry" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>AnimalHusbandry</span></a> <a href="https://pubeurope.com/tags/Bioinformatics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Bioinformatics</span></a> <a href="https://pubeurope.com/tags/BiologicalEngineering" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>BiologicalEngineering</span></a> <a href="https://pubeurope.com/tags/biology" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>biology</span></a> <a href="https://pubeurope.com/tags/biotechnology" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>biotechnology</span></a> <a href="https://pubeurope.com/tags/BranchesOfGenetics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>BranchesOfGenetics</span></a> <a href="https://pubeurope.com/tags/CRISPR" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>CRISPR</span></a> <a href="https://pubeurope.com/tags/DnaSequencing" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>DnaSequencing</span></a> <a href="https://pubeurope.com/tags/Genetics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Genetics</span></a> <a href="https://pubeurope.com/tags/GenomeEditing" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>GenomeEditing</span></a> <a href="https://pubeurope.com/tags/genomics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>genomics</span></a> <a href="https://pubeurope.com/tags/HealthSciences" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>HealthSciences</span></a> <a href="https://pubeurope.com/tags/LifeSciences" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>LifeSciences</span></a> <a href="https://pubeurope.com/tags/micronesia" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>micronesia</span></a> <a href="https://pubeurope.com/tags/MolecularBiology" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>MolecularBiology</span></a> <a href="https://pubeurope.com/tags/Science" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Science</span></a> <a href="https://pubeurope.com/tags/UnitedStates" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>UnitedStates</span></a> <a href="https://pubeurope.com/tags/UnitedStates" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>UnitedStates</span></a> <a href="https://pubeurope.com/tags/US" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>US</span></a></p>
WikiPathways<p>For almost 2 years we have been tracking which literature for citations to specific pathways, via their WikiPathways WPID. Results are shown on pathway pages, under "Cited in", e.g. see <a href="https://www.wikipathways.org/pathways/WP3947" rel="nofollow noopener" translate="no" target="_blank"><span class="invisible">https://www.</span><span class="ellipsis">wikipathways.org/pathways/WP39</span><span class="invisible">47</span></a> (and screenshot). This is partly done weekly NCBI Entrez search (not this weekend, tho, bc of their system upgrade), partly manually.</p><p>So far we collected 2099 citations from 404 different articles to 795 pathways.</p><p><a href="https://fosstodon.org/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>bioinformatics</span></a> <a href="https://fosstodon.org/tags/curation" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>curation</span></a></p>
Dr. Robert M Flight<p>Saw a Reddit post about a "Peer Review LLM", and I decided to test it with one of my own current preprints to see how good it actually is. </p><p>As I expected, it's rubbish, at least in the context of what one should actually expect from a peer review, because an LLM doesn't actually *think*.</p><p>You can see it's output here:</p><p><a href="https://bgpt.pro/?q=Paper%20Review%3A%20Information-Content-Informed%20Kendall-tau%20Correlation%20Methodology%3A%20Interpreting%20Missing%20Values%20as%20Useful%20Information" rel="nofollow noopener" translate="no" target="_blank"><span class="invisible">https://</span><span class="ellipsis">bgpt.pro/?q=Paper%20Review%3A%</span><span class="invisible">20Information-Content-Informed%20Kendall-tau%20Correlation%20Methodology%3A%20Interpreting%20Missing%20Values%20as%20Useful%20Information</span></a></p><p>/1</p><p><a href="https://mastodon.social/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>bioinformatics</span></a> <a href="https://mastodon.social/tags/LLM" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>LLM</span></a> <a href="https://mastodon.social/tags/academia" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>academia</span></a> <a href="https://mastodon.social/tags/PublishOrPerish" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>PublishOrPerish</span></a></p>
Ben Cardoen<p>Bioinformatics.ca has regular workshops on bioinformatics (R/Python/omics), now also open to non Canadian residents<br><a href="https://bioinformatics.ca/workshops-all/2025-pathogen-genomic-epidemiology-online/" rel="nofollow noopener" translate="no" target="_blank"><span class="invisible">https://</span><span class="ellipsis">bioinformatics.ca/workshops-al</span><span class="invisible">l/2025-pathogen-genomic-epidemiology-online/</span></a><br><a href="https://mstdn.science/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>bioinformatics</span></a></p>
Dave Lunt<p>I’m currently trying to workflow together all my DNA sequence cleaning and munging as although each issue is rare there’s ALWAYS some problem. The goal is automatically creating clean and well behaved sequence data. Though there may always be a novel problem waiting to say hello! <a href="https://genomic.social/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>bioinformatics</span></a> <a href="https://genomic.social/tags/genomics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>genomics</span></a></p>
GlyGen<p>📢 Kate Warner gave a talk at ISMB 2025 on "Insights from GlyGen: Developing sustainable knowledgebases with well-defined infrastructure stacks"</p><p>🔗 Info: <a href="https://tinyurl.com/ismbeccb2025" rel="nofollow noopener" translate="no" target="_blank"><span class="invisible">https://</span><span class="">tinyurl.com/ismbeccb2025</span><span class="invisible"></span></a></p><p><a href="https://mstdn.science/tags/glycotime" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>glycotime</span></a> <a href="https://mstdn.science/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>bioinformatics</span></a> <a href="https://mstdn.science/tags/iscb" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>iscb</span></a></p>
Bose-Einstein-Kondensat<p><a href="https://mstdn.social/tags/MolPrint3D" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>MolPrint3D</span></a>: A <a href="https://mstdn.social/tags/Blender" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Blender</span></a> add-on for enhanced <a href="https://mstdn.social/tags/3Dprinting" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>3Dprinting</span></a> of ball-and-stick <a href="https://mstdn.social/tags/molecular" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>molecular</span></a> models:<br><a href="https://doi.org/10.1021/acs.jchemed.7b00549" rel="nofollow noopener" translate="no" target="_blank"><span class="invisible">https://</span><span class="ellipsis">doi.org/10.1021/acs.jchemed.7b</span><span class="invisible">00549</span></a><br><a href="https://mstdn.social/tags/DIYbio" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>DIYbio</span></a> <a href="https://mstdn.social/tags/chemistry" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>chemistry</span></a> <a href="https://mstdn.social/tags/lab" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>lab</span></a> <a href="https://mstdn.social/tags/CompChem" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>CompChem</span></a> <a href="https://mstdn.social/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>bioinformatics</span></a> <a href="https://mstdn.social/tags/visualization" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>visualization</span></a> <a href="https://mstdn.social/tags/MINT" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>MINT</span></a> <a href="https://mstdn.social/tags/STEM" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>STEM</span></a> <a href="https://mstdn.social/tags/EDU" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>EDU</span></a> <a href="https://mstdn.social/tags/school" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>school</span></a> <a href="https://mstdn.social/tags/Schule" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Schule</span></a> <a href="https://mstdn.social/tags/education" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>education</span></a></p>
Luke Pembleton<p>On NCBI what determines which genome assembly gets the green 'reference" star tag? I'm seeming a scaffold level assembly with 40X coverage from 2019 getting the 'reference' star whilst a complete chromosome scale assembly with 300X coverage from 2021 for the same species not... Is this a community driven label that just takes time to update?<br><a href="https://genomic.social/tags/genomics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>genomics</span></a> <a href="https://genomic.social/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>bioinformatics</span></a></p>
US<p><a href="https://www.europesays.com/us/84193/" rel="nofollow noopener" translate="no" target="_blank"><span class="invisible">https://www.</span><span class="">europesays.com/us/84193/</span><span class="invisible"></span></a> Body found in 1994 south of Festus identified | Police Fire <a href="https://pubeurope.com/tags/BennyLeeOlson" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>BennyLeeOlson</span></a> <a href="https://pubeurope.com/tags/Bioinformatics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Bioinformatics</span></a> <a href="https://pubeurope.com/tags/biology" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>biology</span></a> <a href="https://pubeurope.com/tags/biotechnology" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>biotechnology</span></a> <a href="https://pubeurope.com/tags/body" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>body</span></a> <a href="https://pubeurope.com/tags/BodyFound" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>BodyFound</span></a> <a href="https://pubeurope.com/tags/BranchesOfGenetics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>BranchesOfGenetics</span></a> <a href="https://pubeurope.com/tags/BranchesOfScience" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>BranchesOfScience</span></a> <a href="https://pubeurope.com/tags/dna" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>dna</span></a> <a href="https://pubeurope.com/tags/ForensicScience" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>ForensicScience</span></a> <a href="https://pubeurope.com/tags/genealogy" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>genealogy</span></a> <a href="https://pubeurope.com/tags/GeneticGenealogy" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>GeneticGenealogy</span></a> <a href="https://pubeurope.com/tags/Genetics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Genetics</span></a> <a href="https://pubeurope.com/tags/KinshipAndDescent" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>KinshipAndDescent</span></a> <a href="https://pubeurope.com/tags/LawEnforcementTechniques" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>LawEnforcementTechniques</span></a> <a href="https://pubeurope.com/tags/LifeSciences" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>LifeSciences</span></a> <a href="https://pubeurope.com/tags/MississippiRiver" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>MississippiRiver</span></a> <a href="https://pubeurope.com/tags/MolecularBiology" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>MolecularBiology</span></a> <a href="https://pubeurope.com/tags/NucleicAcids" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>NucleicAcids</span></a> <a href="https://pubeurope.com/tags/phylogenetics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>phylogenetics</span></a> <a href="https://pubeurope.com/tags/RushIsland" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>RushIsland</span></a> <a href="https://pubeurope.com/tags/Science" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Science</span></a> <a href="https://pubeurope.com/tags/ScienceAndLaw" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>ScienceAndLaw</span></a> <a href="https://pubeurope.com/tags/unidentified" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>unidentified</span></a> <a href="https://pubeurope.com/tags/UnitedStates" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>UnitedStates</span></a> <a href="https://pubeurope.com/tags/UnitedStates" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>UnitedStates</span></a> <a href="https://pubeurope.com/tags/US" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>US</span></a></p>
United States News Beep<p>Sequencing validates deep learning models for EHR-based detection of Noonan syndrome in pediatric patients</p><p>Cohort characteristics and model risk score distribution The study cohort comprised 92,493 patients enrolled i…<br><a href="https://newsbeep.org/tags/NewsBeep" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>NewsBeep</span></a> <a href="https://newsbeep.org/tags/News" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>News</span></a> <a href="https://newsbeep.org/tags/US" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>US</span></a> <a href="https://newsbeep.org/tags/USA" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>USA</span></a> <a href="https://newsbeep.org/tags/UnitedStates" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>UnitedStates</span></a> <a href="https://newsbeep.org/tags/UnitedStatesOfAmerica" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>UnitedStatesOfAmerica</span></a> <a href="https://newsbeep.org/tags/Genetics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Genetics</span></a> <a href="https://newsbeep.org/tags/Bioinformatics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Bioinformatics</span></a> <a href="https://newsbeep.org/tags/Biomedicine" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Biomedicine</span></a> <a href="https://newsbeep.org/tags/GeneFunction" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>GeneFunction</span></a> <a href="https://newsbeep.org/tags/GeneTherapy" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>GeneTherapy</span></a> <a href="https://newsbeep.org/tags/general" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>general</span></a> <a href="https://newsbeep.org/tags/Geneticsresearch" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Geneticsresearch</span></a> <a href="https://newsbeep.org/tags/HumanGenetics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>HumanGenetics</span></a> <a href="https://newsbeep.org/tags/InternalMedicine" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>InternalMedicine</span></a> <a href="https://newsbeep.org/tags/Next" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Next</span></a>-generationsequencing <a href="https://newsbeep.org/tags/personalizedmedicine" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>personalizedmedicine</span></a> <a href="https://newsbeep.org/tags/Science" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Science</span></a><br><a href="https://www.newsbeep.com/us/26569/" rel="nofollow noopener" translate="no" target="_blank"><span class="invisible">https://www.</span><span class="">newsbeep.com/us/26569/</span><span class="invisible"></span></a></p>
Peter Cock<p>I do like the <a href="https://fediscience.org/tags/AlcareersISMB25" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>AlcareersISMB25</span></a> panel setup at the <a href="https://fediscience.org/tags/ISMBECCB2025" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>ISMBECCB2025</span></a> UK <a href="https://fediscience.org/tags/Bioinformatics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Bioinformatics</span></a> track - the projector has a minimal biography for each panellist (left to right in same order)</p>
Peter Cock<p><a href="https://fediscience.org/tags/ISMBECCB2025" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>ISMBECCB2025</span></a> flyer during the UK <a href="https://fediscience.org/tags/Bioinformatics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Bioinformatics</span></a> track for their panel session:</p><p>CAREERS AND TRAJECTORIES IN AI<br>Help shape the discussion!</p><p>1️⃣Scan QR code or visit Slido.com 4078238<br>2️⃣ Read questions and upvote/downvote preference<br>3️⃣ Submit a new question for the panel if not above<br>4️⃣ Top voted questions will be answered first</p><p>Thoughts on the event? Tag us: <a href="https://fediscience.org/tags/AlcareersISMB25" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>AlcareersISMB25</span></a></p>
US<p><a href="https://www.europesays.com/us/80985/" rel="nofollow noopener" translate="no" target="_blank"><span class="invisible">https://www.</span><span class="">europesays.com/us/80985/</span><span class="invisible"></span></a> Sequencing validates deep learning models for EHR-based detection of Noonan syndrome in pediatric patients <a href="https://pubeurope.com/tags/Bioinformatics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Bioinformatics</span></a> <a href="https://pubeurope.com/tags/Biomedicine" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Biomedicine</span></a> <a href="https://pubeurope.com/tags/GeneFunction" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>GeneFunction</span></a> <a href="https://pubeurope.com/tags/GeneTherapy" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>GeneTherapy</span></a> <a href="https://pubeurope.com/tags/general" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>general</span></a> <a href="https://pubeurope.com/tags/Genetics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Genetics</span></a> <a href="https://pubeurope.com/tags/GeneticsResearch" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>GeneticsResearch</span></a> <a href="https://pubeurope.com/tags/HumanGenetics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>HumanGenetics</span></a> <a href="https://pubeurope.com/tags/InternalMedicine" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>InternalMedicine</span></a> <a href="https://pubeurope.com/tags/NextGenerationSequencing" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>NextGenerationSequencing</span></a> <a href="https://pubeurope.com/tags/PersonalizedMedicine" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>PersonalizedMedicine</span></a> <a href="https://pubeurope.com/tags/Science" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Science</span></a> <a href="https://pubeurope.com/tags/UnitedStates" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>UnitedStates</span></a> <a href="https://pubeurope.com/tags/UnitedStates" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>UnitedStates</span></a> <a href="https://pubeurope.com/tags/US" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>US</span></a></p>
jobRxiv<p>PostDoctoral Position in Bioinformatics </p><p>Universidade Estadual de Campinas</p><p>See the full job description on jobRxiv: <a href="https://jobrxiv.org/job/universidade-estadual-de-campinas-27778-postdoctoral-position-in-bioinformatics/?feed_id=97738" rel="nofollow noopener" translate="no" target="_blank"><span class="invisible">https://</span><span class="ellipsis">jobrxiv.org/job/universidade-e</span><span class="invisible">stadual-de-campinas-27778-postdoctoral-position-in-bioinformatics/?feed_id=97738</span></a></p><p><a href="https://mas.to/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>bioinformatics</span></a> <a href="https://mas.to/tags/ScienceJobs" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>ScienceJobs</span></a> <a href="https://mas.to/tags/hiring" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>hiring</span></a> <a href="https://mas.to/tags/research" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>research</span></a><br><a href="https://jobrxiv.org/job/universidade-estadual-de-campinas-27778-postdoctoral-position-in-bioinformatics/?feed_id=97738" rel="nofollow noopener" translate="no" target="_blank"><span class="invisible">https://</span><span class="ellipsis">jobrxiv.org/job/universidade-e</span><span class="invisible">stadual-de-campinas-27778-postdoctoral-position-in-bioinformatics/?feed_id=97738</span></a></p>
Peter Cock<p><span class="h-card" translate="no"><a href="https://genomic.social/@OpenBio" class="u-url mention" rel="nofollow noopener" target="_blank">@<span>OpenBio</span></a></span> Wow - Nigeria has close to 20% of Africa's population? That means a lot of young educated people, and indirectly high demand for <a href="https://fediscience.org/tags/Bioinformatics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Bioinformatics</span></a> training...</p>
Open Bioinformatics Foundation<p>Successful first remote talk, but switching to plan B and a pre-recorded video from the other remote speaker at <a href="https://genomic.social/tags/BOSC2025" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>BOSC2025</span></a>:</p><p>Seun Olufemi "Connecting Data, People, and Purpose: How Open Science is Advancing <a href="https://genomic.social/tags/Bioinformatics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Bioinformatics</span></a> in a Low-Resource region (<a href="https://genomic.social/tags/Nigeria" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Nigeria</span></a>)"</p>
nf-core<p>Pipeline release! nf-core/genomeassembler v1.1.0 - 1.1.0 - Aluminium Pigeon 'Brass Pigeon'!</p><p>Please see the changelog: <a href="https://github.com/nf-core/genomeassembler/releases/tag/1.1.0" rel="nofollow noopener" translate="no" target="_blank"><span class="invisible">https://</span><span class="ellipsis">github.com/nf-core/genomeassem</span><span class="invisible">bler/releases/tag/1.1.0</span></a></p><p><a href="https://mstdn.science/tags/genomeassembly" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>genomeassembly</span></a> <a href="https://mstdn.science/tags/nfcore" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>nfcore</span></a> <a href="https://mstdn.science/tags/openscience" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>openscience</span></a> <a href="https://mstdn.science/tags/nextflow" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>nextflow</span></a> <a href="https://mstdn.science/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>bioinformatics</span></a></p>
Peter Cock<p>Based on the show of hands just now, half the <a href="https://fediscience.org/tags/BOSC2025" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>BOSC2025</span></a> attendees are at their first BOSC (<a href="https://fediscience.org/tags/Bioinformatics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Bioinformatics</span></a> <a href="https://fediscience.org/tags/OpenSource" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>OpenSource</span></a> Conference) 🎉</p>
Johannes Köster<p><a href="https://fosstodon.org/tags/vembrane" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>vembrane</span></a>, our CLI tool for manipulating VCF/BCF files via Python expressions has gained a new subcommand for sorting. Use it to sort by impact, pathogenicity, frequencies, or any complex Python logic, e.g. for variant prioritization.<br><a href="https://github.com/vembrane/vembrane/blob/main/docs/sort.md" rel="nofollow noopener" translate="no" target="_blank"><span class="invisible">https://</span><span class="ellipsis">github.com/vembrane/vembrane/b</span><span class="invisible">lob/main/docs/sort.md</span></a><br><a href="https://fosstodon.org/tags/genomics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>genomics</span></a> <a href="https://fosstodon.org/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>bioinformatics</span></a></p>