CellBioNews<p>Ancient <a href="https://scientificnetwork.de/tags/DNA" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>DNA</span></a> reveals 6,000 years of the lives of <a href="https://scientificnetwork.de/tags/Antarctic" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>Antarctic</span></a> <a href="https://scientificnetwork.de/tags/penguins" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>penguins</span></a>.</p><p><a href="https://scientificnetwork.de/tags/metagenomic" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>metagenomic</span></a> <a href="https://scientificnetwork.de/tags/sediment" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>sediment</span></a> <a href="https://scientificnetwork.de/tags/sedaDNA" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>sedaDNA</span></a> <a href="https://scientificnetwork.de/tags/Pygoscelis" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>Pygoscelis</span></a></p><p> <a href="https://phys.org/news/2025-03-ancient-dna-reveals-years-antarctic.html" rel="nofollow noopener noreferrer" translate="no" target="_blank"><span class="invisible">https://</span><span class="ellipsis">phys.org/news/2025-03-ancient-</span><span class="invisible">dna-reveals-years-antarctic.html</span></a></p>
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#metagenomic
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Giuseppe Michieli<p><a href="https://mstdn.science/tags/VirID" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>VirID</span></a>: Beyond Virus <a href="https://mstdn.science/tags/Discovery" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>Discovery</span></a> - An Integrated <a href="https://mstdn.science/tags/Platform" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>Platform</span></a> for Comprehensive <a href="https://mstdn.science/tags/RNA" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>RNA</span></a> <a href="https://mstdn.science/tags/Virus" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>Virus</span></a> Characterization, BioRxIV: <a href="https://www.biorxiv.org/content/10.1101/2024.07.05.602175v2" rel="nofollow noopener noreferrer" translate="no" target="_blank"><span class="invisible">https://www.</span><span class="ellipsis">biorxiv.org/content/10.1101/20</span><span class="invisible">24.07.05.602175v2</span></a> </p><p>We developed VirID, a <a href="https://mstdn.science/tags/software" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>software</span></a> tool specifically designed for discovery & characterization of RNA viruses from <a href="https://mstdn.science/tags/metagenomic" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>metagenomic</span></a> data. Basis of VirID is a comprehensive RNA-dependent RNA <a href="https://mstdn.science/tags/polymerase" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>polymerase</span></a> (RdRP) database to enhance a workflow that includes RNA virus discovery, phylogenetic analysis, and phylogeny-based virus characterization.</p>
James Fellows Yates<p>I'm looking forward to the <span class="h-card" translate="no"><a href="https://mstdn.science/@nf_core" class="u-url mention" rel="nofollow noopener noreferrer" target="_blank">@<span>nf_core</span></a></span> hackathon and <a href="https://genomic.social/tags/Nextflow" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>Nextflow</span></a> Summit in Barcelona in October!</p><p>Is anyone here on Mastodon coming as well (or joining remotely)? </p><p>I'll be giving a talk during the summit giving an overview of the <a href="https://genomic.social/tags/metagenomic" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>metagenomic</span></a> and <a href="https://genomic.social/tags/MicrobialEcology" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>MicrobialEcology</span></a> pipeline 'offerings' of <a href="https://genomic.social/tags/nfcore" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>nfcore</span></a> :)</p><p>If you're interested, more info here: <a href="https://summit.nextflow.io/2024/barcelona/" rel="nofollow noopener noreferrer" translate="no" target="_blank"><span class="invisible">https://</span><span class="ellipsis">summit.nextflow.io/2024/barcel</span><span class="invisible">ona/</span></a></p><p><a href="https://genomic.social/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>bioinformatics</span></a></p>
CellBioNews<p>New technology protects <a href="https://scientificnetwork.de/tags/crops" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>crops</span></a> by testing the air for the <a href="https://scientificnetwork.de/tags/DNA" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>DNA</span></a> of <a href="https://scientificnetwork.de/tags/plant" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>plant</span></a> <a href="https://scientificnetwork.de/tags/diseases" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>diseases</span></a>.</p><p><a href="https://scientificnetwork.de/tags/aeroDNA" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>aeroDNA</span></a> <a href="https://scientificnetwork.de/tags/metagenomic" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>metagenomic</span></a> <a href="https://scientificnetwork.de/tags/pathogens" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>pathogens</span></a> <a href="https://scientificnetwork.de/tags/fungi" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>fungi</span></a> <a href="https://scientificnetwork.de/tags/agriculture" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>agriculture</span></a> </p><p><a href="https://phys.org/news/2024-08-technology-crops-air-dna-diseases.html" rel="nofollow noopener noreferrer" translate="no" target="_blank"><span class="invisible">https://</span><span class="ellipsis">phys.org/news/2024-08-technolo</span><span class="invisible">gy-crops-air-dna-diseases.html</span></a></p>
Giuseppe Michieli<p><a href="https://mstdn.science/tags/VIRAL" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>VIRAL</span></a> <a href="https://mstdn.science/tags/METAGENOMIC" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>METAGENOMIC</span></a> <a href="https://mstdn.science/tags/SURVEY" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>SURVEY</span></a> OF <a href="https://mstdn.science/tags/CASPIAN" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>CASPIAN</span></a> <a href="https://mstdn.science/tags/SEALS" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>SEALS</span></a>, BioRxIV: <a href="https://www.biorxiv.org/content/10.1101/2024.07.14.603418v1" rel="nofollow noopener noreferrer" translate="no" target="_blank"><span class="invisible">https://www.</span><span class="ellipsis">biorxiv.org/content/10.1101/20</span><span class="invisible">24.07.14.603418v1</span></a> </p><p>Sequencing libraries from 35 seals sampled 2009-2020 were analysed, finding sequences from viral families <a href="https://mstdn.science/tags/Picornaviridae" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>Picornaviridae</span></a>, <a href="https://mstdn.science/tags/Adenoviridae" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>Adenoviridae</span></a>, <a href="https://mstdn.science/tags/Circoviridae" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>Circoviridae</span></a>, <a href="https://mstdn.science/tags/Herpesviridae" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>Herpesviridae</span></a>, <a href="https://mstdn.science/tags/Papillomaviridae" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>Papillomaviridae</span></a>, <a href="https://mstdn.science/tags/Caliciviridae" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>Caliciviridae</span></a>, <a href="https://mstdn.science/tags/Orthomyxoviridae" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>Orthomyxoviridae</span></a>, <a href="https://mstdn.science/tags/Anelloviridae" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>Anelloviridae</span></a>, <a href="https://mstdn.science/tags/Smacoviridae" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>Smacoviridae</span></a>, <a href="https://mstdn.science/tags/Cruciviridae" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>Cruciviridae</span></a> & <a href="https://mstdn.science/tags/Parvoviridae" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>Parvoviridae</span></a>... Among seq. recovered were partial contigs for <a href="https://mstdn.science/tags/influenza" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>influenza</span></a> B, representing only 2nd molecular identification in marine mammals.</p>
CellBioNews<p>Study reveals the <a href="https://mstdn.science/tags/microbes" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>microbes</span></a> vital to a healthy Brisbane <a href="https://mstdn.science/tags/River" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>River</span></a>.</p><p><a href="https://mstdn.science/tags/genomics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>genomics</span></a> <a href="https://mstdn.science/tags/biodiversity" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>biodiversity</span></a> <a href="https://mstdn.science/tags/ecosystem_health" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>ecosystem_health</span></a> <a href="https://mstdn.science/tags/metagenomic" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>metagenomic</span></a> <a href="https://mstdn.science/tags/biogeochemical_cycles" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>biogeochemical_cycles</span></a> <a href="https://mstdn.science/tags/eutrophy" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>eutrophy</span></a></p><p><a href="https://phys.org/news/2024-06-reveals-microbes-vital-healthy-brisbane.html" rel="nofollow noopener noreferrer" translate="no" target="_blank"><span class="invisible">https://</span><span class="ellipsis">phys.org/news/2024-06-reveals-</span><span class="invisible">microbes-vital-healthy-brisbane.html</span></a></p>
Frank Aylward<p>Benchmarking <a href="https://genomic.social/tags/bioinformatic" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>bioinformatic</span></a> <a href="https://genomic.social/tags/virus" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>virus</span></a> identification tools using real-world <a href="https://genomic.social/tags/metagenomic" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>metagenomic</span></a> data across biomes</p><p><a href="https://genomebiology.biomedcentral.com/articles/10.1186/s13059-024-03236-4" rel="nofollow noopener noreferrer" translate="no" target="_blank"><span class="invisible">https://</span><span class="ellipsis">genomebiology.biomedcentral.co</span><span class="invisible">m/articles/10.1186/s13059-024-03236-4</span></a></p>
CellBioNews<p>First-of-its-kind integrated dataset enables <a href="https://scientificnetwork.de/tags/genes" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>genes</span></a>-to-<a href="https://scientificnetwork.de/tags/ecosystems" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>ecosystems</span></a> research.</p><p><a href="https://scientificnetwork.de/tags/g2e" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>g2e</span></a> <a href="https://scientificnetwork.de/tags/microbiome" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>microbiome</span></a> <a href="https://scientificnetwork.de/tags/soil" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>soil</span></a> <a href="https://scientificnetwork.de/tags/biome_omics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>biome_omics</span></a> <a href="https://scientificnetwork.de/tags/metagenomic" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>metagenomic</span></a> <a href="https://scientificnetwork.de/tags/metabolomic" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>metabolomic</span></a> <a href="https://scientificnetwork.de/tags/transcriptomic" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>transcriptomic</span></a> </p><p><a href="https://phys.org/news/2024-04-kind-dataset-enables-genes-ecosystems.html" rel="nofollow noopener noreferrer" translate="no" target="_blank"><span class="invisible">https://</span><span class="ellipsis">phys.org/news/2024-04-kind-dat</span><span class="invisible">aset-enables-genes-ecosystems.html</span></a></p>
Bose-Einstein-Kondensat<p>CZ ID: An <a href="https://mstdn.social/tags/OpenSource" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>OpenSource</span></a> cloud-based, no-code platform enabling advanced long read <a href="https://mstdn.social/tags/metagenomic" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>metagenomic</span></a> <a href="https://mstdn.social/tags/analysis" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>analysis</span></a>:</p><p>Preprint: <a href="https://doi.org/10.1101/2024.02.29.579666" rel="nofollow noopener noreferrer" translate="no" target="_blank"><span class="invisible">https://</span><span class="ellipsis">doi.org/10.1101/2024.02.29.579</span><span class="invisible">666</span></a><br>Web: <a href="https://czid.org/" rel="nofollow noopener noreferrer" translate="no" target="_blank"><span class="invisible">https://</span><span class="">czid.org/</span><span class="invisible"></span></a><br>GitHub: <a href="https://github.com/chanzuckerberg/czid-workflows/tree/main" rel="nofollow noopener noreferrer" translate="no" target="_blank"><span class="invisible">https://</span><span class="ellipsis">github.com/chanzuckerberg/czid</span><span class="invisible">-workflows/tree/main</span></a></p><p><a href="https://mstdn.social/tags/DIYbio" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>DIYbio</span></a> <a href="https://mstdn.social/tags/lab" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>lab</span></a> <a href="https://mstdn.social/tags/instruments" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>instruments</span></a> <a href="https://mstdn.social/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>bioinformatics</span></a> <a href="https://mstdn.social/tags/NGS" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>NGS</span></a> <a href="https://mstdn.social/tags/genomics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>genomics</span></a> <a href="https://mstdn.social/tags/Kraken2" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>Kraken2</span></a> <a href="https://mstdn.social/tags/microbiome" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>microbiome</span></a></p>
ℵ₀ 🏳️⚧️🏴☠️<p><a href="https://www.nature.com/articles/d41586-023-03414-7" rel="nofollow noopener noreferrer" translate="no" target="_blank"><span class="invisible">https://www.</span><span class="ellipsis">nature.com/articles/d41586-023</span><span class="invisible">-03414-7</span></a> <a href="https://mastodon.social/tags/nepal" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>nepal</span></a> <a href="https://mastodon.social/tags/SHAPU" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>SHAPU</span></a> <a href="https://mastodon.social/tags/Gazalina" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>Gazalina</span></a> <a href="https://mastodon.social/tags/GazalinaMoth" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>GazalinaMoth</span></a> <a href="https://mastodon.social/tags/moth" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>moth</span></a> <a href="https://mastodon.social/tags/metagenomic" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>metagenomic</span></a> <a href="https://mastodon.social/tags/sequencing" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>sequencing</span></a> <a href="https://mastodon.social/tags/geneticanalysis" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>geneticanalysis</span></a> <br>10.1038/d41586-023-03414-7<br><a href="https://doi.org/10.1038/d41586-023-03414-7" rel="nofollow noopener noreferrer" translate="no" target="_blank"><span class="invisible">https://</span><span class="ellipsis">doi.org/10.1038/d41586-023-034</span><span class="invisible">14-7</span></a></p><p>See also:<br><a href="https://www.thelancet.com/journals/langlo/article/PIIS2214-109X(21)00513-1/fulltext" rel="nofollow noopener noreferrer" translate="no" target="_blank"><span class="invisible">https://www.</span><span class="ellipsis">thelancet.com/journals/langlo/</span><span class="invisible">article/PIIS2214-109X(21)00513-1/fulltext</span></a></p><p>&</p><p><a href="https://www.tandfonline.com/doi/abs/10.1080/09286586.2020.1820533" rel="nofollow noopener noreferrer" translate="no" target="_blank"><span class="invisible">https://www.</span><span class="ellipsis">tandfonline.com/doi/abs/10.108</span><span class="invisible">0/09286586.2020.1820533</span></a></p>
SPAAM-community<p><a href="https://genomic.social/tags/MetagenomicsMonday" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>MetagenomicsMonday</span></a> 🧬 <br>A large-scale <a href="https://genomic.social/tags/environmentalDNA" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>environmentalDNA</span></a> <a href="https://genomic.social/tags/metagenomic" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>metagenomic</span></a> study of ancient plant and mammal communities! Researchers analyzed 535 <a href="https://genomic.social/tags/permafrost" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>permafrost</span></a> and lake sediment samples from across the Arctic spanning the past 50,000 years. 🦣🫎🌿🌲 <a href="https://genomic.social/tags/sedaDNA" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>sedaDNA</span></a> <a href="https://genomic.social/tags/ancientDNA" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>ancientDNA</span></a> <a href="https://genomic.social/tags/ancientmetagenomics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>ancientmetagenomics</span></a> <a href="https://genomic.social/tags/sedDNA" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>sedDNA</span></a> <a href="https://genomic.social/tags/arctic" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>arctic</span></a> <br><a href="https://www.nature.com/articles/s41586-021-04016-x" rel="nofollow noopener noreferrer" translate="no" target="_blank"><span class="invisible">https://www.</span><span class="ellipsis">nature.com/articles/s41586-021</span><span class="invisible">-04016-x</span></a></p>
Pamela Ferretti<p>We thank the Reviewers for their suggestions, which are publicly available alongside our work, and that we will address in the revised version we are currently working on.</p><p>Thanks again to all the authors, in particular <span class="h-card"><a href="https://bird.makeup/users/tsbschm" class="u-url mention" rel="nofollow noopener noreferrer" target="_blank">@<span>tsbschm</span></a></span> <span class="h-card"><a href="https://mstdn.science/@JakobWirbel" class="u-url mention" rel="nofollow noopener noreferrer" target="_blank">@<span>JakobWirbel</span></a></span>, <span class="h-card"><a href="https://mstdn.science/@olex_maistrenko" class="u-url mention" rel="nofollow noopener noreferrer" target="_blank">@<span>olex_maistrenko</span></a></span> and Thea Van Rossum.</p><p>I want to take this opportunity to share a couple of broader messages:</p><p>1) While we are the 1st to perform a global <a href="https://mstdn.science/tags/metagenomic" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>metagenomic</span></a> meta-analysis of this magnitude on <a href="https://mstdn.science/tags/Cdifficile" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>Cdifficile</span></a> in infancy, we are not the first ones to</p>
SPAAM-community<p>💻 AMDirT facilitates automated metadata curation and data validation, as well as rapid data filtering and downloading. Together, both standardised metadata and tooling will help towards easier incorporation and reuse of public <a href="https://genomic.social/tags/ancient" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>ancient</span></a> <a href="https://genomic.social/tags/metagenomic" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>metagenomic</span></a> <a href="https://genomic.social/tags/datasets" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>datasets</span></a> into future analyses. 📊</p>
SPAAM-community<p>Through a series of community-based hackathon events, AncientMetagenomeDir was updated to provide standardised library-level metadata of existing and new ancient <a href="https://genomic.social/tags/metagenomic" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>metagenomic</span></a> samples. 🧬 :agar_plate:</p>
maria_lopopolo<p>🚨<a href="https://genomic.social/tags/spaamtisch" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>spaamtisch</span></a> attendees<br>📈Our first 6 months of <br><span class="h-card"><a href="https://genomic.social/@spaam_community" class="u-url mention" rel="nofollow noopener noreferrer" target="_blank">@<span>spaam_community</span></a></span> <a href="https://genomic.social/tags/spaamtisch" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>spaamtisch</span></a> seminars and regular's table meetings are over. Before starting a new chapter, let us know what you think about the past events by filling this survey form by the 31/08/23</p><p><a href="https://docs.google.com/forms/d/e/1FAIpQLSc8NylFBSchrS4KErAJDKvRZTxkLooM0YB-zuSf5yjRvWYtyA/viewform" rel="nofollow noopener noreferrer" target="_blank"><span class="invisible">https://</span><span class="ellipsis">docs.google.com/forms/d/e/1FAI</span><span class="invisible">pQLSc8NylFBSchrS4KErAJDKvRZTxkLooM0YB-zuSf5yjRvWYtyA/viewform</span></a></p><p><a href="https://genomic.social/tags/aDNA" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>aDNA</span></a> <a href="https://genomic.social/tags/seminar" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>seminar</span></a> <a href="https://genomic.social/tags/ancientDNA" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>ancientDNA</span></a> <a href="https://genomic.social/tags/metagenomic" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>metagenomic</span></a> <a href="https://genomic.social/tags/microbiome" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>microbiome</span></a> <a href="https://genomic.social/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>bioinformatics</span></a> <a href="https://genomic.social/tags/genomics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>genomics</span></a> <a href="https://genomic.social/tags/archaeology" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>archaeology</span></a> <a href="https://genomic.social/tags/ancient" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>ancient</span></a> <a href="https://genomic.social/tags/genetics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>genetics</span></a> <a href="https://genomic.social/tags/data" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>data</span></a></p>
SPAAM-community<p>👇🚨<a href="https://genomic.social/tags/spaamtisch" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>spaamtisch</span></a> meeting videos from past seminars are now available on our community YouTube channel! If you missed <br>Maxime Borry and <span class="h-card"><a href="https://genomic.social/@jfy133" class="u-url mention" rel="nofollow noopener noreferrer" target="_blank">@<span>jfy133</span></a></span> seminar on AMDirT, a brand new tool for browsing and filtering ancientmetagenomeDir, now you can watch it here <br><a href="https://youtu.be/evPKxkH4FzI" rel="nofollow noopener noreferrer" target="_blank"><span class="invisible">https://</span><span class="">youtu.be/evPKxkH4FzI</span><span class="invisible"></span></a></p><p><a href="https://genomic.social/tags/aDNA" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>aDNA</span></a> <a href="https://genomic.social/tags/ancientDNA" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>ancientDNA</span></a> <a href="https://genomic.social/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>bioinformatics</span></a> <a href="https://genomic.social/tags/metadata" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>metadata</span></a> <a href="https://genomic.social/tags/metagenomic" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>metagenomic</span></a> <a href="https://genomic.social/tags/data" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>data</span></a> <a href="https://genomic.social/tags/tools" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>tools</span></a> <a href="https://genomic.social/tags/community" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>community</span></a></p>
Vivek Mutalik<p>Carbon acquisition ecological strategies to connect soil microbial biodiversity and carbon cycling -<a href="https://fediscience.org/tags/metagenomic" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>metagenomic</span></a> </p><p><a href="https://www.sciencedirect.com/science/article/abs/pii/S0038071722003509" rel="nofollow noopener noreferrer" target="_blank"><span class="invisible">https://www.</span><span class="ellipsis">sciencedirect.com/science/arti</span><span class="invisible">cle/abs/pii/S0038071722003509</span></a></p>
Vivek Mutalik<p>What do you most want to understand about how collective features emerge in microbial communities?</p><p><a href="https://fediscience.org/tags/metagenomic" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>metagenomic</span></a> <a href="https://fediscience.org/tags/microbiome" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>microbiome</span></a> </p><p><a href="https://www.cell.com/cell-systems/fulltext/S2405-4712(23)00027-3#%20" rel="nofollow noopener noreferrer" target="_blank"><span class="invisible">https://www.</span><span class="ellipsis">cell.com/cell-systems/fulltext</span><span class="invisible">/S2405-4712(23)00027-3#%20</span></a></p>
Vivek Mutalik<p>Pitfalls of genotyping microbial communities with rapidly growing genome collections: Cell Systems<br><a href="https://fediscience.org/tags/metagenomic" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>metagenomic</span></a> <br><a href="https://www.cell.com/cell-systems/fulltext/S2405-4712(22)00495-1#%20" rel="nofollow noopener noreferrer" target="_blank"><span class="invisible">https://www.</span><span class="ellipsis">cell.com/cell-systems/fulltext</span><span class="invisible">/S2405-4712(22)00495-1#%20</span></a></p>
Vivek Mutalik<p>“Bias in <a href="https://fediscience.org/tags/metagenomic" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>metagenomic</span></a> functional inference”</p><p><a href="https://www.nature.com/articles/s43705-023-00221-z" rel="nofollow noopener noreferrer" target="_blank"><span class="invisible">https://www.</span><span class="ellipsis">nature.com/articles/s43705-023</span><span class="invisible">-00221-z</span></a></p>
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