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#nextflow

5 posts3 participants0 posts today
Peter Cock<p><span class="h-card" translate="no"><a href="https://genomic.social/@BOSC" class="u-url mention" rel="nofollow noopener" target="_blank">@<span>BOSC</span></a></span> I am delighted to learn the more accurate description was a BOSC logo pun:</p><p>“You get a pair, and you get a pear!”</p><p><a href="https://fediscience.org/tags/BOSC2025" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>BOSC2025</span></a> 🧦🍐 <a href="https://fediscience.org/tags/NextFlow" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>NextFlow</span></a> swag at <a href="https://fediscience.org/tags/ISMBECCB2025" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>ISMBECCB2025</span></a></p>
Peter Cock<p>Massive engineering changes for modularity, <a href="https://fediscience.org/tags/NextFlow" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>NextFlow</span></a> workflows, data:code separation, etc - Matthias Blum “InterProScan 6: a modern large-scale protein function annotation pipeline” <a href="https://fediscience.org/tags/BOSC2025" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>BOSC2025</span></a> <a href="https://fediscience.org/tags/ISMBECCB2025" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>ISMBECCB2025</span></a></p>
BOSC (OpenBio's Conference)<p>You get socks, and you get socks! 🧦 </p><p>Thanks to <a href="https://genomic.social/tags/BOSC2025" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>BOSC2025</span></a> sponsor Seqera <a href="https://genomic.social/tags/NextFlow" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>NextFlow</span></a> for the conference swag 👍</p><p><a href="https://seqera.io/" rel="nofollow noopener" translate="no" target="_blank"><span class="invisible">https://</span><span class="">seqera.io/</span><span class="invisible"></span></a></p>
Peter Cock<p>Christine Orengo at <a href="https://fediscience.org/tags/BOSC2025" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>BOSC2025</span></a> says they are looking to use <a href="https://fediscience.org/tags/NextFlow" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>NextFlow</span></a> in the CATH dataflows as more and more new data sources and tools get used - great slide cartoon with caption caption “I only ever need to run it once, 'Il just do it manually!” 🤣</p>
nf-core<p>Pipeline release! nf-core/genomeassembler v1.1.0 - 1.1.0 - Aluminium Pigeon 'Brass Pigeon'!</p><p>Please see the changelog: <a href="https://github.com/nf-core/genomeassembler/releases/tag/1.1.0" rel="nofollow noopener" translate="no" target="_blank"><span class="invisible">https://</span><span class="ellipsis">github.com/nf-core/genomeassem</span><span class="invisible">bler/releases/tag/1.1.0</span></a></p><p><a href="https://mstdn.science/tags/genomeassembly" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>genomeassembly</span></a> <a href="https://mstdn.science/tags/nfcore" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>nfcore</span></a> <a href="https://mstdn.science/tags/openscience" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>openscience</span></a> <a href="https://mstdn.science/tags/nextflow" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>nextflow</span></a> <a href="https://mstdn.science/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>bioinformatics</span></a></p>
Pierre Lindenbaum<p>how to use <a href="https://genomic.social/tags/nextflow" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>nextflow</span></a> "multiMap' to transform a channel if the 'input' of an existing module doesn't fit your needs.</p><p>eg: you want </p><p> tuple val(meta), path(bam),path(bed)</p><p>while the module was designed the following way:</p><p> tuple val(meta1), path(bed)<br> tuple val(meta2), path(bam)<br> <br><a href="https://gist.github.com/lindenb/fbd76e5887754a7831d95422ea58f499" rel="nofollow noopener" translate="no" target="_blank"><span class="invisible">https://</span><span class="ellipsis">gist.github.com/lindenb/fbd76e</span><span class="invisible">5887754a7831d95422ea58f499</span></a></p><p>thanks a lot <span class="h-card" translate="no"><a href="https://genomic.social/@mbp" class="u-url mention" rel="nofollow noopener" target="_blank">@<span>mbp</span></a></span> for the tip !</p><p><a href="https://genomic.social/tags/nextflow" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>nextflow</span></a> <a href="https://genomic.social/tags/multimap" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>multimap</span></a> <a href="https://genomic.social/tags/nfcore" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>nfcore</span></a> <a href="https://genomic.social/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>bioinformatics</span></a></p>
Adam H. Sparks :rstats:<p>{targets} getting a shoutout in <span class="h-card" translate="no"><a href="https://genomic.social/@kgagalova" class="u-url mention" rel="nofollow noopener" target="_blank">@<span>kgagalova</span></a></span>’s talk, even though the focus is on <a href="https://rstats.me/tags/nextflow" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>nextflow</span></a> <a href="https://rstats.me/tags/RStats" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>RStats</span></a> <a href="https://rstats.me/tags/ReproducibleResearch" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>ReproducibleResearch</span></a> <a href="https://rstats.me/tags/Bioinformatics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Bioinformatics</span></a> <a href="https://rstats.me/tags/targets" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>targets</span></a>. <a href="https://rstats.me/tags/Pipelines" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Pipelines</span></a></p>
nf-core<p>Pipeline release! nf-core/pairgenomealign v2.2.0 - nf-core/pairgenomealign v2.2.0 – Chagara ponzu!</p><p>Please see the changelog: <a href="https://github.com/nf-core/pairgenomealign/releases/tag/2.2.0" rel="nofollow noopener" translate="no" target="_blank"><span class="invisible">https://</span><span class="ellipsis">github.com/nf-core/pairgenomea</span><span class="invisible">lign/releases/tag/2.2.0</span></a></p><p><a href="https://mstdn.science/tags/comparativegenomics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>comparativegenomics</span></a> <a href="https://mstdn.science/tags/dotplot" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>dotplot</span></a> <a href="https://mstdn.science/tags/genomics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>genomics</span></a> <a href="https://mstdn.science/tags/last" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>last</span></a> <a href="https://mstdn.science/tags/pairwisealignment" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>pairwisealignment</span></a> <a href="https://mstdn.science/tags/synteny" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>synteny</span></a> <a href="https://mstdn.science/tags/wholegenomealignment" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>wholegenomealignment</span></a> <a href="https://mstdn.science/tags/nfcore" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>nfcore</span></a> <a href="https://mstdn.science/tags/openscience" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>openscience</span></a> <a href="https://mstdn.science/tags/nextflow" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>nextflow</span></a> <a href="https://mstdn.science/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>bioinformatics</span></a></p>
nf-core<p>Pipeline release! nf-core/methylseq v4.0.0 - Wallace Chrysalis!</p><p>Please see the changelog: <a href="https://github.com/nf-core/methylseq/releases/tag/4.0.0" rel="nofollow noopener" translate="no" target="_blank"><span class="invisible">https://</span><span class="ellipsis">github.com/nf-core/methylseq/r</span><span class="invisible">eleases/tag/4.0.0</span></a></p><p><a href="https://mstdn.science/tags/bisulfitesequencing" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>bisulfitesequencing</span></a> <a href="https://mstdn.science/tags/dnamethylation" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>dnamethylation</span></a> <a href="https://mstdn.science/tags/emseq" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>emseq</span></a> <a href="https://mstdn.science/tags/epigenome" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>epigenome</span></a> <a href="https://mstdn.science/tags/epigenomics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>epigenomics</span></a> <a href="https://mstdn.science/tags/methylseq" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>methylseq</span></a> <a href="https://mstdn.science/tags/pbat" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>pbat</span></a> <a href="https://mstdn.science/tags/rrbs" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>rrbs</span></a> <a href="https://mstdn.science/tags/nfcore" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>nfcore</span></a> <a href="https://mstdn.science/tags/openscience" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>openscience</span></a> <a href="https://mstdn.science/tags/nextflow" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>nextflow</span></a> <a href="https://mstdn.science/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>bioinformatics</span></a></p>
nf-core<p>Pipeline release! nf-core/drugresponseeval v1.1.0 - Drugresponseeval 1.1.0 - Humongous Zapdos!</p><p>Please see the changelog: <a href="https://github.com/nf-core/drugresponseeval/releases/tag/1.1.0" rel="nofollow noopener" translate="no" target="_blank"><span class="invisible">https://</span><span class="ellipsis">github.com/nf-core/drugrespons</span><span class="invisible">eeval/releases/tag/1.1.0</span></a></p><p><a href="https://mstdn.science/tags/celllines" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>celllines</span></a> <a href="https://mstdn.science/tags/crossvalidation" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>crossvalidation</span></a> <a href="https://mstdn.science/tags/deeplearning" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>deeplearning</span></a> <a href="https://mstdn.science/tags/drugresponse" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>drugresponse</span></a> <a href="https://mstdn.science/tags/drugresponseprediction" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>drugresponseprediction</span></a> <a href="https://mstdn.science/tags/drugs" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>drugs</span></a> <a href="https://mstdn.science/tags/fairprinciples" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>fairprinciples</span></a> <a href="https://mstdn.science/tags/generalization" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>generalization</span></a> <a href="https://mstdn.science/tags/hyperparametertuning" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>hyperparametertuning</span></a> <a href="https://mstdn.science/tags/machinelearning" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>machinelearning</span></a> <a href="https://mstdn.science/tags/randomizationtests" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>randomizationtests</span></a> <a href="https://mstdn.science/tags/robustnessassessment" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>robustnessassessment</span></a> <a href="https://mstdn.science/tags/training" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>training</span></a> <a href="https://mstdn.science/tags/nfcore" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>nfcore</span></a> <a href="https://mstdn.science/tags/openscience" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>openscience</span></a> <a href="https://mstdn.science/tags/nextflow" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>nextflow</span></a> <a href="https://mstdn.science/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>bioinformatics</span></a></p>
nf-core<p>Pipeline release! nf-core/oncoanalyser v2.1.0 - 2.1.0 - Peruvian Pelican!</p><p>Please see the changelog: <a href="https://github.com/nf-core/oncoanalyser/releases/tag/2.1.0" rel="nofollow noopener" translate="no" target="_blank"><span class="invisible">https://</span><span class="ellipsis">github.com/nf-core/oncoanalyse</span><span class="invisible">r/releases/tag/2.1.0</span></a></p><p><a href="https://mstdn.science/tags/cancer" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>cancer</span></a> <a href="https://mstdn.science/tags/clinical" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>clinical</span></a> <a href="https://mstdn.science/tags/dna" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>dna</span></a> <a href="https://mstdn.science/tags/exome" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>exome</span></a> <a href="https://mstdn.science/tags/ngs" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>ngs</span></a> <a href="https://mstdn.science/tags/panel" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>panel</span></a> <a href="https://mstdn.science/tags/rna" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>rna</span></a> <a href="https://mstdn.science/tags/targeted" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>targeted</span></a> <a href="https://mstdn.science/tags/wgs" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>wgs</span></a> <a href="https://mstdn.science/tags/wigits" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>wigits</span></a> <a href="https://mstdn.science/tags/wts" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>wts</span></a> <a href="https://mstdn.science/tags/nfcore" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>nfcore</span></a> <a href="https://mstdn.science/tags/openscience" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>openscience</span></a> <a href="https://mstdn.science/tags/nextflow" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>nextflow</span></a> <a href="https://mstdn.science/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>bioinformatics</span></a></p>
nf-core<p>Pipeline release! nf-core/demo v1.0.2 - nf-core/demo 1.0.2 - Mostly Harmless!</p><p>Please see the changelog: <a href="https://github.com/nf-core/demo/releases/tag/1.0.2" rel="nofollow noopener" translate="no" target="_blank"><span class="invisible">https://</span><span class="ellipsis">github.com/nf-core/demo/releas</span><span class="invisible">es/tag/1.0.2</span></a></p><p><a href="https://mstdn.science/tags/demo" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>demo</span></a> <a href="https://mstdn.science/tags/minimalexample" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>minimalexample</span></a> <a href="https://mstdn.science/tags/training" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>training</span></a> <a href="https://mstdn.science/tags/tutorial" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>tutorial</span></a> <a href="https://mstdn.science/tags/nfcore" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>nfcore</span></a> <a href="https://mstdn.science/tags/openscience" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>openscience</span></a> <a href="https://mstdn.science/tags/nextflow" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>nextflow</span></a> <a href="https://mstdn.science/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>bioinformatics</span></a></p>
nf-core<p>Pipeline release! nf-core/pathogensurveillance v1.0.0 - 1.0.0!</p><p>Please see the changelog: <a href="https://github.com/nf-core/pathogensurveillance/releases/tag/1.0.0" rel="nofollow noopener" translate="no" target="_blank"><span class="invisible">https://</span><span class="ellipsis">github.com/nf-core/pathogensur</span><span class="invisible">veillance/releases/tag/1.0.0</span></a></p><p> <a href="https://mstdn.science/tags/nfcore" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>nfcore</span></a> <a href="https://mstdn.science/tags/openscience" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>openscience</span></a> <a href="https://mstdn.science/tags/nextflow" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>nextflow</span></a> <a href="https://mstdn.science/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>bioinformatics</span></a></p>
Luke Pembleton<p>1/🧵 Ok, so I finally figured out the interesting (i.e. painful) error I’ve been chasing in my <a href="https://genomic.social/tags/Nextflow" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Nextflow</span></a> genomic mapping pipeline the past few days.<br>Basically, I’ve got hundreds of bwa mem mapping jobs running as separate processes in Docker containers, grouped on large AWS EC2 instances. Seemingly randomly some samples would fail during the subsequent mark duplicates process due to issues with the read group (@RG) headers.<br><a href="https://genomic.social/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>bioinformatics</span></a> <a href="https://genomic.social/tags/genomics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>genomics</span></a></p>
nf-core<p>Pipeline release! nf-core/raredisease v2.6.0 - 2.6.0 - Cacofonix!</p><p>Please see the changelog: <a href="https://github.com/nf-core/raredisease/releases/tag/2.6.0" rel="nofollow noopener" translate="no" target="_blank"><span class="invisible">https://</span><span class="ellipsis">github.com/nf-core/raredisease</span><span class="invisible">/releases/tag/2.6.0</span></a></p><p><a href="https://mstdn.science/tags/diagnostics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>diagnostics</span></a> <a href="https://mstdn.science/tags/raredisease" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>raredisease</span></a> <a href="https://mstdn.science/tags/snv" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>snv</span></a> <a href="https://mstdn.science/tags/structuralvariants" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>structuralvariants</span></a> <a href="https://mstdn.science/tags/variantannotation" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>variantannotation</span></a> <a href="https://mstdn.science/tags/variantcalling" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>variantcalling</span></a> <a href="https://mstdn.science/tags/wes" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>wes</span></a> <a href="https://mstdn.science/tags/wgs" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>wgs</span></a> <a href="https://mstdn.science/tags/nfcore" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>nfcore</span></a> <a href="https://mstdn.science/tags/openscience" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>openscience</span></a> <a href="https://mstdn.science/tags/nextflow" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>nextflow</span></a> <a href="https://mstdn.science/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>bioinformatics</span></a></p>
nf-core<p>Pipeline release! nf-core/pixelator v2.0.0 - nf-core/pixelator 2.0.0!</p><p>Please see the changelog: <a href="https://github.com/nf-core/pixelator/releases/tag/2.0.0" rel="nofollow noopener" translate="no" target="_blank"><span class="invisible">https://</span><span class="ellipsis">github.com/nf-core/pixelator/r</span><span class="invisible">eleases/tag/2.0.0</span></a></p><p><a href="https://mstdn.science/tags/molecularpixelation" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>molecularpixelation</span></a> <a href="https://mstdn.science/tags/pixelator" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>pixelator</span></a> <a href="https://mstdn.science/tags/pixelgentechnologies" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>pixelgentechnologies</span></a> <a href="https://mstdn.science/tags/proteins" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>proteins</span></a> <a href="https://mstdn.science/tags/singlecell" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>singlecell</span></a> <a href="https://mstdn.science/tags/singlecellomics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>singlecellomics</span></a> <a href="https://mstdn.science/tags/nfcore" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>nfcore</span></a> <a href="https://mstdn.science/tags/openscience" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>openscience</span></a> <a href="https://mstdn.science/tags/nextflow" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>nextflow</span></a> <a href="https://mstdn.science/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>bioinformatics</span></a></p>
Jorge<p>I've refactor the <a href="https://genomic.social/tags/nextflow" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>nextflow</span></a> plugins stats site and now it's under IncSteps domain.</p><p>It has not only a new look&amp;feel but also ... you can comment on it (using github discussion integration)!!!!</p><p><a href="https://incsteps.github.io/nf-plugins-stats/" rel="nofollow noopener" translate="no" target="_blank"><span class="invisible">https://</span><span class="ellipsis">incsteps.github.io/nf-plugins-</span><span class="invisible">stats/</span></a>)</p>
nf-core<p>Pipeline release! nf-core/createtaxdb v1.0.0 - v1.0 - Helpful Hydra - [2025-06-19]!</p><p>Please see the changelog: <a href="https://github.com/nf-core/createtaxdb/releases/tag/1.0.0" rel="nofollow noopener" translate="no" target="_blank"><span class="invisible">https://</span><span class="ellipsis">github.com/nf-core/createtaxdb</span><span class="invisible">/releases/tag/1.0.0</span></a></p><p><a href="https://mstdn.science/tags/database" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>database</span></a> <a href="https://mstdn.science/tags/databasebuilder" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>databasebuilder</span></a> <a href="https://mstdn.science/tags/metagenomicprofiling" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>metagenomicprofiling</span></a> <a href="https://mstdn.science/tags/metagenomics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>metagenomics</span></a> <a href="https://mstdn.science/tags/profiling" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>profiling</span></a> <a href="https://mstdn.science/tags/taxonomicprofiling" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>taxonomicprofiling</span></a> <a href="https://mstdn.science/tags/nfcore" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>nfcore</span></a> <a href="https://mstdn.science/tags/openscience" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>openscience</span></a> <a href="https://mstdn.science/tags/nextflow" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>nextflow</span></a> <a href="https://mstdn.science/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>bioinformatics</span></a></p>
nf-core<p>Pipeline release! nf-core/metatdenovo v1.2.0 - nf-core/metatdenovo 1.2.0!</p><p>Please see the changelog: <a href="https://github.com/nf-core/metatdenovo/releases/tag/1.2.0" rel="nofollow noopener" translate="no" target="_blank"><span class="invisible">https://</span><span class="ellipsis">github.com/nf-core/metatdenovo</span><span class="invisible">/releases/tag/1.2.0</span></a></p><p><a href="https://mstdn.science/tags/eukaryotes" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>eukaryotes</span></a> <a href="https://mstdn.science/tags/metagenomics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>metagenomics</span></a> <a href="https://mstdn.science/tags/metatranscriptomics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>metatranscriptomics</span></a> <a href="https://mstdn.science/tags/prokaryotes" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>prokaryotes</span></a> <a href="https://mstdn.science/tags/viruses" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>viruses</span></a> <a href="https://mstdn.science/tags/nfcore" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>nfcore</span></a> <a href="https://mstdn.science/tags/openscience" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>openscience</span></a> <a href="https://mstdn.science/tags/nextflow" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>nextflow</span></a> <a href="https://mstdn.science/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>bioinformatics</span></a></p>
nf-core<p>Pipeline release! nf-core/bamtofastq v2.2.0 - 2.2.0 - Kathleen Booth!</p><p>Please see the changelog: <a href="https://github.com/nf-core/bamtofastq/releases/tag/2.2.0" rel="nofollow noopener" translate="no" target="_blank"><span class="invisible">https://</span><span class="ellipsis">github.com/nf-core/bamtofastq/</span><span class="invisible">releases/tag/2.2.0</span></a></p><p><a href="https://mstdn.science/tags/bamtofastq" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>bamtofastq</span></a> <a href="https://mstdn.science/tags/conversion" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>conversion</span></a> <a href="https://mstdn.science/tags/cramtofastq" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>cramtofastq</span></a> <a href="https://mstdn.science/tags/nfcore" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>nfcore</span></a> <a href="https://mstdn.science/tags/openscience" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>openscience</span></a> <a href="https://mstdn.science/tags/nextflow" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>nextflow</span></a> <a href="https://mstdn.science/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>bioinformatics</span></a></p>