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#scverse

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Bioconductor<p>✍️ New Bioconductor blog post on the SpatialData hackathon and workshop held in November in Switzerland, organized by scverse with Bioconductor participation. Check it out here: <a href="https://buff.ly/4fM1qrH" rel="nofollow noopener noreferrer" translate="no" target="_blank"><span class="invisible">https://</span><span class="">buff.ly/4fM1qrH</span><span class="invisible"></span></a></p><p>Thanks, Artür Manukyan!</p><p><a href="https://genomic.social/tags/Bioconductor" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>Bioconductor</span></a> <a href="https://genomic.social/tags/SpatialData" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>SpatialData</span></a> <a href="https://genomic.social/tags/scverse" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>scverse</span></a> <a href="https://genomic.social/tags/Hackathon" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>Hackathon</span></a> <a href="https://genomic.social/tags/Bioinformatics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>Bioinformatics</span></a> <a href="https://genomic.social/tags/DataScience" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>DataScience</span></a> <a href="https://genomic.social/tags/OpenScience" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>OpenScience</span></a> <a href="https://genomic.social/tags/RStats" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>RStats</span></a> <a href="https://genomic.social/tags/Python" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>Python</span></a></p>
nf-core<p>Pipeline release! nf-core/scdownstream vv0.0.1 - v0.0.1!</p><p>Please see the changelog: <a href="https://github.com/nf-core/scdownstream/releases/tag/v0.0.1" rel="nofollow noopener noreferrer" translate="no" target="_blank"><span class="invisible">https://</span><span class="ellipsis">github.com/nf-core/scdownstrea</span><span class="invisible">m/releases/tag/v0.0.1</span></a></p><p><a href="https://mstdn.science/tags/clustering" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>clustering</span></a> <a href="https://mstdn.science/tags/dimensionality" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>dimensionality</span></a>-reduction <a href="https://mstdn.science/tags/integration" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>integration</span></a> <a href="https://mstdn.science/tags/quality" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>quality</span></a>-control <a href="https://mstdn.science/tags/scverse" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>scverse</span></a> <a href="https://mstdn.science/tags/single" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>single</span></a>-cell <a href="https://mstdn.science/tags/nfcore" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>nfcore</span></a> <a href="https://mstdn.science/tags/openscience" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>openscience</span></a> <a href="https://mstdn.science/tags/nextflow" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>nextflow</span></a> <a href="https://mstdn.science/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>bioinformatics</span></a></p>
Shannon Quinn :verified_root:<p>I’ve been spending a lot of time the past couple weeks digging into the <a href="https://quinnwitz.house/tags/scverse" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>scverse</span></a> part of the Python ecosystem (*omics, basically) and most of it is still a mystery to me but I’m loving it so far.</p><p>The developers clearly got together and set down some basic rules and guidelines for other packages to be able to “play nice” with the core set and boy does it show.</p><p>I’m still working my way through the <a href="https://quinnwitz.house/tags/scanpy" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>scanpy</span></a> and <a href="https://quinnwitz.house/tags/squidpy" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>squidpy</span></a> tutorials but major props to these teams 👏</p>
Lars Juhl Jensen<p>scVerse conference on single-cell data analysis:<br><a href="https://youtube.com/shorts/taptslYxYJU?feature=share" rel="nofollow noopener noreferrer" translate="no" target="_blank"><span class="invisible">https://</span><span class="ellipsis">youtube.com/shorts/taptslYxYJU</span><span class="invisible">?feature=share</span></a><br><a href="https://mas.to/tags/scverse" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>scverse</span></a> <a href="https://mas.to/tags/Munich" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>Munich</span></a> <a href="https://mas.to/tags/Germany" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>Germany</span></a></p>
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