If you would like to attend a microscopy or bioimage analysis training course in the next 6 months but don’t have funding, check out our Microscopy Training Grant from @J_Cell_Sci and @focalplane_jcs.
Next deadline: 6 June 2025
https://www.biologists.com/grants/jcs-focalplane-training-grants/
If you train people in ImageJ, Fiji, whatever, even if it isn't your day job, please let us know, and please share this post! Thanks a ton, we really appreciate it. (2/2) forms.gle/C8dUpg8qZkbD... #bioimaging #microscopy #bioimageanalysis
Open Source Bioimage Analysis ...
Bioimaging and bioimage analysis friends, some help if you have 2-3 mins; for a paper, we're trying to estimate the number of biologists trained in open source software or tools in the last ~5 years. (1/2) #bioimaging #microscopy #bioimageanalysis
Workshop on True Image Deconvolution, Restoration, and Analysis
When: March 13th, 2025 – 3 days from now.
2 hours long: 14:30 - 16:30 CET
Where: online, via zoom.
Program: https://www.crg.eu/en/event/workshop-true-image-deconvolution-restoration-and-analysis
Registration: https://apps.crg.es/content/internet/events/webforms/workshop-true-image-deconvolution-restoration-and-analysis
Is your current biological image analysis producing inaccurate results? Apply for #EMBOBioImage and fix that! 
Learn theoretical advancements and the practical skills to apply them.
Apply by 4 June
14 – 19 September
EMBL Heidelberg and Virtual
https://s.embl.org/bia25-01-ma
Our #preprint list is now up on FocalPlane. This week we focus on research in #bioimageanalysis. Drop us a message if we’re missing any preprints that you’ve been reading or writing!
https://focalplane.biologists.com/2024/11/29/microscopy-preprints-bioimage-analysis-7/
If you would like to attend a #microscopy or #bioimageanalysis training course in the next ~6 months but don’t have funding, check out our JCS-FocalPlane training grants to see if you are eligible.
Next deadline: 22 November 2024
https://www.biologists.com/grants/jcs-focalplane-training-grants/
Need a 5-15 minute break from doomscrolling? (You know you do!) Take 5 minutes and tell us how to make #bioimageanalysis #imageanalysis better!
RE: https://bsky.app/profile/did:plc:o7tynxmyxsuhoeknkm7r2dul/post/3l6z5bxyc7o25
Virtual I2K starts TOMORROW, Monday the 28th! 34 FREE sessions, 900+ registrants so far. Learn more about favorite #bioimageanalysis tools or find your next favorite! i2kconference.org/virtual Please also help our community improve by filling out our survey - forum.image.sc/t/2024-image...
Have you ever analyzed a #microscope image before- even just a single one? Please take our survey on progress and places to still improve for image analysis software! #microscopy #imageanalysis #bioimageanalysis forum.image.sc/t/2024-image...
2024 Image Analysis Survey
#preprint alert 
Can Large Language Models solve common #BioImageAnalysis coding tasks? And which #LLM performs best? 
Great collaboration with Christian Tischer, Jean-Karim Hériché and Nico Scherf
https://www.biorxiv.org/content/10.1101/2024.04.19.590278v3
This 3D image stack deconvolution tool looks super useful for #bioimageanalysis
Deconwolf enables high-performance deconvolution of widefield fluorescence microscopy images
Wernersson et al., Nature Methods 2024
https://doi.org/10.1038/s41592-024-02294-7
Github: https://github.com/elgw/deconwolf/
Program: https://deconwolf.fht.org/
Fresh out on biorxiv - me getting to brag about the stupendous, brilliant, AMAZING folks who have been kind enough to come hang out with us at the
#broadinstitute to do our Postdoctoral Training Program in #BioimageAnalysis
. Into the
for story!
https://www.biorxiv.org/content/10.1101/2024.05.13.593910v1
As academic #BioImageAnalysis jobs in Australia go, this one is pretty good: Microscopy Platform Applications Specialist at UniMelb Biological Optical Microscopy Platform.
https://jobs.unimelb.edu.au/caw/en/job/916889
The BOMP team is very nice, and continuing positions are really hard to find in Oz right now. (I do not have one.) Advertised at Academic Level A (geared at someone recently out of PhD).
First, from me - an invited short review in Journal of #Microscopy about general strategies to how you actually sit down and solve image analysis #bioimageanalysis problems efficiently and effectively. One of my favorite things I've ever written! Hope it helps. https://doi.org/10.1111/jmi.13288 (2/3)
In our interview with
Estibaliz Gómez de Mariscal we chat about Esti’s career path, the art of collaborations and #DL4MicEverywhere, a project that Esti co-leads with
@HenriquesLab and
@guijacquemet.
https://focalplane.biologists.com/2024/02/27/an-interview-with-estibaliz-gomez-de-mariscal/
#bioimageanalysis #deeplearning #collaboration
Just 1 week left to apply to #IALSJanelia, @AICjanelia 's two-week long #microscopy bootcamp covering everything from #experimentalDesign to #imaging to #bioimageAnalysis
Read more and apply by Feb 15 here: https://www.aicjanelia.org/imagingacrosslengthscales
In May, there is a course on #DeepLearning for #Microscopy #ImageAnalysis (EMBO-DL4MIA) by #EMBO.
https://humantechnopole.it/en/trainings/deep-learning-for-microscopy-image-analysis-embo-dl4mia/Human Technopole, Milan, Italy, In presence
Date: 08/05/2024 - 16/05/2024
Registration Deadline: 04/02/2024
I made a #BioImageAnalysis #GPT 
Compared to #ChatGPT it provides more concise hints and knows more about some Python libraries my collaborators and yours truly maintain. Thanks to all contributors and as always: Feedback is 
ly welcome 
https://chat.openai.com/g/g-psAohb1OY-bio-image-analysis-gpt
AI4Life has been quite busy lately! Organized a Hackathon & Solvathon in Heidelberg to scale AI tools for #BioimageAnalysis and Open Call project progress:
https://ai4life.eurobioimaging.eu/ai4life-hackathon-solvathon/
Plus, actively participated in a Hackathon in Cologne organised by @NFDI4DS:
https://ai4life.eurobioimaging.eu/ai4life-nfdi4datascience-mini-hackathons/
